PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36351-36400 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.0575 | 88.0952 | 82.2222 | 96.8750 | 37 | 5 | 37 | 8 | 1 | 12.5000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.1961 | 85.1852 | 95.8333 | 97.7941 | 23 | 4 | 23 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8538 | 99.7443 | 99.9634 | 29.9590 | 2731 | 7 | 2732 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | map_l250_m0_e0 | het | 95.1276 | 95.2855 | 94.9702 | 94.2264 | 1435 | 71 | 1435 | 76 | 1 | 1.3158 | |
| ckim-dragen | SNP | * | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | func_cds | * | 99.6097 | 99.9637 | 99.2582 | 28.1352 | 13782 | 5 | 13782 | 103 | 1 | 0.9709 | |
| ckim-dragen | SNP | ti | func_cds | het | 99.3804 | 99.9647 | 98.8029 | 32.2466 | 8501 | 3 | 8501 | 103 | 1 | 0.9709 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.2963 | 100.0000 | 92.8571 | 87.8261 | 12 | 0 | 13 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.9362 | 96.3801 | 99.5434 | 90.9728 | 213 | 8 | 218 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 98.0107 | 96.7105 | 99.3464 | 91.3803 | 147 | 5 | 152 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 87.8261 | 12 | 0 | 13 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.7586 | 75.0000 | 92.3077 | 98.1690 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.7778 | 70.0000 | 87.5000 | 98.5102 | 7 | 3 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8598 | 99.7898 | 99.9299 | 26.0373 | 1424 | 3 | 1425 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | map_l250_m0_e0 | het | 95.1974 | 95.5032 | 94.8936 | 94.2165 | 892 | 42 | 892 | 48 | 1 | 2.0833 | |
| ciseli-custom | INDEL | I6_15 | tech_badpromoters | * | 25.0000 | 15.3846 | 66.6667 | 57.1429 | 2 | 11 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 50.0000 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 65.0000 | 86.6667 | 52.0000 | 85.0299 | 13 | 2 | 13 | 12 | 1 | 8.3333 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 65.0000 | 86.6667 | 52.0000 | 85.0299 | 13 | 2 | 13 | 12 | 1 | 8.3333 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 61.5385 | 80.0000 | 50.0000 | 50.0000 | 4 | 1 | 4 | 4 | 1 | 25.0000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 33.1034 | 85.7143 | 20.5128 | 82.6667 | 6 | 1 | 8 | 31 | 1 | 3.2258 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 22.2222 | 50.0000 | 14.2857 | 93.8596 | 1 | 1 | 1 | 6 | 1 | 16.6667 | |
| ciseli-custom | SNP | * | map_l100_m0_e0 | hetalt | 66.6667 | 56.2500 | 81.8182 | 78.0000 | 9 | 7 | 9 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | hetalt | 53.3333 | 44.4444 | 66.6667 | 85.3659 | 4 | 5 | 4 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | map_l150_m0_e0 | hetalt | 33.3333 | 33.3333 | 33.3333 | 90.9091 | 1 | 2 | 1 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | tech_badpromoters | * | 85.2439 | 94.9045 | 77.3684 | 48.6486 | 149 | 8 | 147 | 43 | 1 | 2.3256 | |
| ciseli-custom | SNP | * | tech_badpromoters | homalt | 95.5888 | 96.2500 | 94.9367 | 52.9762 | 77 | 3 | 75 | 4 | 1 | 25.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.0781 | 70.0000 | 6.0150 | 83.1858 | 7 | 3 | 8 | 125 | 1 | 0.8000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 42.5532 | 100.0000 | 27.0270 | 90.7500 | 6 | 0 | 10 | 27 | 1 | 3.7037 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 40.0000 | 100.0000 | 25.0000 | 50.0000 | 1 | 0 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 39.5480 | 83.3333 | 25.9259 | 83.4356 | 5 | 1 | 7 | 20 | 1 | 5.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 28.5714 | 50.0000 | 20.0000 | 93.5065 | 1 | 1 | 1 | 4 | 1 | 25.0000 | |
| ciseli-custom | SNP | ti | map_l100_m0_e0 | hetalt | 69.5652 | 57.1429 | 88.8889 | 73.5294 | 8 | 6 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l125_m0_e0 | hetalt | 61.5385 | 50.0000 | 80.0000 | 82.1429 | 4 | 4 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m0_e0 | hetalt | 40.0000 | 33.3333 | 50.0000 | 90.4762 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | ti | tech_badpromoters | * | 86.2240 | 92.9412 | 80.4124 | 43.9306 | 79 | 6 | 78 | 19 | 1 | 5.2632 | |
| ciseli-custom | SNP | ti | tech_badpromoters | homalt | 95.0609 | 95.1220 | 95.0000 | 49.3671 | 39 | 2 | 38 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 65.0000 | 86.6667 | 52.0000 | 85.0299 | 13 | 2 | 13 | 12 | 1 | 8.3333 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 77.6749 | 97.5930 | 64.5091 | 70.4237 | 892 | 22 | 887 | 488 | 1 | 0.2049 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 65.0000 | 86.6667 | 52.0000 | 85.0299 | 13 | 2 | 13 | 12 | 1 | 8.3333 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 61.5385 | 80.0000 | 50.0000 | 50.0000 | 4 | 1 | 4 | 4 | 1 | 25.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 34.0392 | 86.1111 | 21.2121 | 74.2590 | 31 | 5 | 35 | 130 | 1 | 0.7692 | |
| ciseli-custom | SNP | tv | map_l100_m0_e0 | hetalt | 66.6667 | 56.2500 | 81.8182 | 78.0000 | 9 | 7 | 9 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | tv | map_l125_m0_e0 | hetalt | 53.3333 | 44.4444 | 66.6667 | 85.3659 | 4 | 5 | 4 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | tv | map_l150_m0_e0 | hetalt | 33.3333 | 33.3333 | 33.3333 | 90.9091 | 1 | 2 | 1 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | * | func_cds | * | 98.4444 | 99.5506 | 97.3626 | 49.5006 | 443 | 2 | 443 | 12 | 1 | 8.3333 | |
| ckim-dragen | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 37.9781 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.0439 | 96.5665 | 99.5671 | 75.8368 | 225 | 8 | 230 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7661 | 99.8597 | 99.6727 | 76.2860 | 2135 | 3 | 2132 | 7 | 1 | 14.2857 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0901 | 96.9697 | 99.2366 | 79.4349 | 128 | 4 | 130 | 1 | 1 | 100.0000 | |