PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35551-35600 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.2788 | 89.2617 | 97.6744 | 69.3587 | 133 | 16 | 126 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 95.4063 | 91.4601 | 99.7085 | 54.4489 | 332 | 31 | 342 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.7291 | 96.2264 | 99.2795 | 65.1606 | 714 | 28 | 689 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.3413 | 95.6476 | 99.0960 | 66.2729 | 901 | 41 | 877 | 8 | 1 | 12.5000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 89.2857 | 81.5217 | 98.6842 | 59.5745 | 75 | 17 | 75 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 90.9091 | 84.3373 | 98.5915 | 47.0149 | 70 | 13 | 70 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.3706 | 95.4839 | 99.3333 | 79.5640 | 148 | 7 | 149 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 77.7778 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3617 | 97.6852 | 99.0476 | 60.3025 | 211 | 5 | 208 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | het | 95.3087 | 93.0070 | 97.7273 | 76.9231 | 133 | 10 | 129 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I6_15 | segdup | * | 98.2573 | 97.1429 | 99.3976 | 90.0360 | 170 | 5 | 165 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | segdup | het | 98.1509 | 97.5904 | 98.7179 | 89.4595 | 81 | 2 | 77 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | func_cds | * | 99.6647 | 99.8898 | 99.4405 | 22.8252 | 18130 | 20 | 18129 | 102 | 1 | 0.9804 | |
| ltrigg-rtg1 | SNP | * | func_cds | het | 99.4644 | 99.8387 | 99.0928 | 23.2229 | 11143 | 18 | 11142 | 102 | 1 | 0.9804 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.1355 | 98.3410 | 99.9430 | 61.2925 | 1719 | 29 | 1754 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.3672 | 99.4179 | 97.3384 | 59.4908 | 4270 | 25 | 4352 | 119 | 1 | 0.8403 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5366 | 99.3299 | 95.8069 | 62.8145 | 2668 | 18 | 2719 | 119 | 1 | 0.8403 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2661 | 99.8221 | 98.7161 | 56.1302 | 6173 | 11 | 6305 | 82 | 1 | 1.2195 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.8848 | 99.7965 | 97.9897 | 57.5988 | 3923 | 8 | 3997 | 82 | 1 | 1.2195 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.5263 | 90.1554 | 97.1591 | 89.2157 | 348 | 38 | 342 | 10 | 1 | 10.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.2553 | 90.5797 | 96.0938 | 89.2437 | 250 | 26 | 246 | 10 | 1 | 10.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.5027 | 97.6813 | 99.3380 | 83.9369 | 2654 | 63 | 2551 | 17 | 1 | 5.8824 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.5285 | 98.0726 | 98.9887 | 85.3252 | 1730 | 34 | 1664 | 17 | 1 | 5.8824 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.7867 | 78.5714 | 89.7436 | 95.4064 | 33 | 9 | 35 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 81.0526 | 77.7778 | 84.6154 | 96.1310 | 21 | 6 | 22 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8441 | 99.8073 | 99.8810 | 33.7603 | 6732 | 13 | 6714 | 8 | 1 | 12.5000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 83.5267 | 73.1707 | 97.2973 | 89.3372 | 30 | 11 | 36 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | segdup | het | 98.6738 | 99.4225 | 97.9363 | 87.6799 | 17217 | 100 | 17227 | 363 | 1 | 0.2755 | |
| ltrigg-rtg1 | SNP | ti | func_cds | * | 99.7465 | 99.8912 | 99.6022 | 21.3270 | 13772 | 15 | 13771 | 55 | 1 | 1.8182 | |
| ltrigg-rtg1 | SNP | ti | func_cds | het | 99.6011 | 99.8471 | 99.3563 | 21.6630 | 8491 | 13 | 8490 | 55 | 1 | 1.8182 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0944 | 98.2843 | 99.9179 | 60.1440 | 1203 | 21 | 1217 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8066 | 99.6337 | 99.9801 | 44.8476 | 10065 | 37 | 10060 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.6028 | 92.3077 | 97.0149 | 89.8434 | 204 | 17 | 195 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.1701 | 92.7632 | 95.6204 | 90.4795 | 141 | 11 | 131 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.3467 | 97.5309 | 99.1763 | 83.8090 | 1264 | 32 | 1204 | 10 | 1 | 10.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6187 | 98.4724 | 98.7654 | 85.1838 | 838 | 13 | 800 | 10 | 1 | 10.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.8845 | 99.1738 | 98.5968 | 78.6472 | 6602 | 55 | 6605 | 94 | 1 | 1.0638 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.5609 | 99.3157 | 97.8175 | 79.7318 | 4209 | 29 | 4213 | 94 | 1 | 1.0638 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3788 | 99.6180 | 99.1407 | 38.1189 | 10691 | 41 | 10730 | 93 | 1 | 1.0753 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.0969 | 99.5403 | 98.6573 | 40.9208 | 6713 | 31 | 6760 | 92 | 1 | 1.0870 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 80.3022 | 68.5714 | 96.8750 | 88.4058 | 24 | 11 | 31 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7697 | 99.7184 | 99.8211 | 26.0771 | 3895 | 11 | 3905 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9300 | 99.9299 | 99.9300 | 24.2713 | 1426 | 1 | 1428 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | HG002compoundhet | homalt | 99.0027 | 98.2290 | 99.7886 | 40.4282 | 3328 | 60 | 3304 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.9971 | 99.4760 | 96.5614 | 59.6546 | 1329 | 7 | 1376 | 49 | 1 | 2.0408 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9927 | 99.4152 | 94.6855 | 62.3980 | 850 | 5 | 873 | 49 | 1 | 2.0408 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.9606 | 99.8160 | 98.1198 | 64.2712 | 2170 | 4 | 2244 | 43 | 1 | 2.3256 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3663 | 99.7116 | 97.0568 | 64.7187 | 1383 | 4 | 1418 | 43 | 1 | 2.3256 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.6268 | 98.9870 | 98.2693 | 80.7168 | 4104 | 42 | 4145 | 73 | 1 | 1.3699 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.0783 | 98.8658 | 97.3033 | 81.4881 | 2615 | 30 | 2634 | 73 | 1 | 1.3699 | |