PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35401-35450 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I6_15 | func_cds | * | 96.4706 | 95.3488 | 97.6190 | 38.2353 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.5415 | 89.8113 | 99.7976 | 44.9275 | 476 | 54 | 493 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.2812 | 96.8927 | 99.7101 | 66.5373 | 343 | 11 | 344 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4595 | 100.0000 | 98.9247 | 66.6667 | 92 | 0 | 92 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.9543 | 90.6336 | 99.7076 | 43.5644 | 329 | 34 | 341 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 86.5441 | 77.1084 | 98.6111 | 27.2727 | 64 | 19 | 71 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.4034 | 93.5484 | 99.4382 | 67.4589 | 174 | 12 | 177 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.3077 | 92.3077 | 92.3077 | 66.6667 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 83.3333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 90.6574 | 26 | 7 | 26 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 80.0000 | 70.5882 | 92.3077 | 91.8750 | 12 | 5 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 84.4214 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 92.8571 | 88.1356 | 98.1132 | 84.9432 | 52 | 7 | 52 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 95.0673 | 91.3793 | 99.0654 | 85.5405 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 93.1034 | 88.5246 | 98.1818 | 85.6397 | 54 | 7 | 54 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | * | 95.0673 | 91.3793 | 99.0654 | 85.9580 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 93.1034 | 88.5246 | 98.1818 | 85.9694 | 54 | 7 | 54 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 76.9231 | 66.6667 | 90.9091 | 94.8598 | 10 | 5 | 10 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 55.5556 | 83.3333 | 95.1220 | 5 | 4 | 5 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 89.4619 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 87.2727 | 80.0000 | 96.0000 | 89.8785 | 24 | 6 | 24 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 92.0000 | 86.7925 | 97.8723 | 90.7480 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 87.2727 | 80.0000 | 96.0000 | 90.9747 | 24 | 6 | 24 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 91.0476 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e1 | het | 87.2727 | 80.0000 | 96.0000 | 91.1348 | 24 | 6 | 24 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 71.4286 | 62.5000 | 83.3333 | 96.5714 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 57.1429 | 50.0000 | 66.6667 | 97.1154 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m1_e0 | * | 86.9565 | 80.0000 | 95.2381 | 93.9655 | 20 | 5 | 20 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 94.0594 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 86.9565 | 80.0000 | 95.2381 | 94.6835 | 20 | 5 | 20 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 94.6188 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 88.0000 | 81.4815 | 95.6522 | 94.4712 | 22 | 5 | 22 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 94.3966 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.0000 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| jli-custom | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.3051 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jli-custom | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 97.5962 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m1_e0 | het | 57.1429 | 50.0000 | 66.6667 | 97.6378 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 97.3913 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | tech_badpromoters | * | 98.2249 | 97.6471 | 98.8095 | 45.4545 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 41.6667 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7135 | 99.6183 | 99.8088 | 64.2271 | 522 | 2 | 522 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4059 | 99.0138 | 99.8012 | 86.4347 | 502 | 5 | 502 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5726 | 99.3603 | 99.7859 | 85.7055 | 466 | 3 | 466 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7660 | 99.5995 | 99.9330 | 79.8733 | 1492 | 6 | 1492 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7732 | 99.6038 | 99.9432 | 61.2967 | 1760 | 7 | 1760 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8574 | 99.7720 | 99.9429 | 62.6048 | 7003 | 16 | 6999 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7163 | 99.4597 | 99.9741 | 59.5798 | 3866 | 21 | 3866 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.1220 | 92.8571 | 97.5000 | 89.8219 | 39 | 3 | 39 | 1 | 1 | 100.0000 | |