PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35151-35200 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 97.2222 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 94.4444 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 98.5507 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 97.2973 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | C1_5 | * | het | 89.8401 | 88.8889 | 90.8120 | 96.3931 | 8 | 1 | 425 | 43 | 1 | 2.3256 | |
| ltrigg-rtg1 | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 98.9324 | 96.5458 | 0 | 0 | 278 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | C1_5 | HG002complexvar | het | 91.8033 | 85.7143 | 98.8235 | 86.8787 | 6 | 1 | 420 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 99.6183 | 86.5847 | 0 | 0 | 261 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 85.7143 | 97.0339 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 71.4286 | 93.0000 | 0 | 0 | 5 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 96.3636 | 96.5300 | 0 | 0 | 53 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 96.3636 | 96.5300 | 0 | 0 | 53 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 50.0000 | 96.9231 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 88.8889 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 92.5000 | 96.7742 | 0 | 0 | 37 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 85.7143 | 97.1074 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 98.1818 | 96.2017 | 0 | 0 | 54 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 98.6111 | 83.5616 | 0 | 0 | 142 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 98.1132 | 91.7574 | 0 | 0 | 52 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 99.1228 | 86.3309 | 0 | 0 | 113 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 96.1538 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.0000 | 97.5689 | 0 | 0 | 12 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 98.0952 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 77.7778 | 97.8365 | 0 | 0 | 7 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 99.0741 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 97.8022 | 96.1813 | 0 | 0 | 89 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 97.7273 | 96.1027 | 0 | 0 | 43 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 97.0874 | 96.0985 | 0 | 0 | 100 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 97.9592 | 95.8858 | 0 | 0 | 48 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 33.3333 | 98.0132 | 0 | 0 | 1 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 98.8764 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.7239 | 97.5877 | 99.8869 | 55.9761 | 890 | 22 | 883 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 84.0042 | 73.5294 | 97.9592 | 95.6328 | 50 | 18 | 48 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 75.6757 | 66.6667 | 87.5000 | 94.5946 | 6 | 3 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4586 | 97.3913 | 99.5495 | 58.8889 | 224 | 6 | 221 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.3820 | 91.3043 | 97.6744 | 49.4118 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 87.5000 | 87.5000 | 87.5000 | 78.3784 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.6660 | 81.6092 | 97.0588 | 84.4037 | 71 | 16 | 66 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.1963 | 82.6087 | 94.5946 | 86.1423 | 38 | 8 | 35 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.0528 | 78.8889 | 97.1014 | 85.5649 | 71 | 19 | 67 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.2547 | 79.1667 | 94.7368 | 87.3754 | 38 | 10 | 36 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 86.8020 | 78.3505 | 97.2973 | 84.9899 | 76 | 21 | 72 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 87.1390 | 80.3922 | 95.1220 | 86.7742 | 41 | 10 | 39 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | * | 92.1763 | 86.7133 | 98.3740 | 86.2876 | 124 | 19 | 121 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | homalt | 90.6250 | 85.2941 | 96.6667 | 84.5361 | 29 | 5 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | segdup | * | 94.7368 | 93.1034 | 96.4286 | 92.2971 | 54 | 4 | 54 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | segdup | het | 94.5946 | 94.5946 | 94.5946 | 91.9037 | 35 | 2 | 35 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4853 | 98.2646 | 98.7069 | 72.8496 | 906 | 16 | 916 | 12 | 1 | 8.3333 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.5961 | 94.5946 | 98.6842 | 87.1622 | 70 | 4 | 75 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.8593 | 98.4779 | 99.2436 | 74.6743 | 647 | 10 | 656 | 5 | 1 | 20.0000 | |