PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35001-35050 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5915 | 100.0000 | 97.2222 | 85.6574 | 35 | 0 | 35 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | * | 94.8959 | 96.5116 | 93.3333 | 92.9961 | 83 | 3 | 84 | 6 | 1 | 16.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | homalt | 93.0233 | 95.2381 | 90.9091 | 95.1111 | 20 | 1 | 20 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 89.8860 | 81.7168 | 99.8700 | 38.3320 | 733 | 164 | 768 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.6676 | 96.8208 | 98.5294 | 69.4245 | 335 | 11 | 335 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7378 | 99.5812 | 99.8950 | 80.4517 | 951 | 4 | 951 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8557 | 100.0000 | 99.7118 | 79.2216 | 346 | 0 | 346 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.0820 | 92.4836 | 99.9718 | 25.6399 | 3519 | 286 | 3543 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 73.0080 | 57.7670 | 99.1736 | 59.2593 | 119 | 87 | 120 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 70.0793 | 54.1899 | 99.1525 | 26.2500 | 97 | 82 | 117 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 93.9805 | 88.9241 | 99.6466 | 70.0529 | 281 | 35 | 282 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2044 | 98.8843 | 99.5266 | 75.4930 | 1684 | 19 | 1682 | 8 | 1 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.7573 | 90.7063 | 99.1870 | 77.2011 | 244 | 25 | 244 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 98.3607 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4666 | 99.1489 | 99.7863 | 69.8065 | 466 | 4 | 467 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 96.8346 | 98.0695 | 95.6305 | 89.6028 | 762 | 15 | 766 | 35 | 1 | 2.8571 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 96.8975 | 98.1084 | 95.7160 | 90.3622 | 778 | 15 | 782 | 35 | 1 | 2.8571 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 96.9616 | 98.1481 | 95.8034 | 90.3939 | 795 | 15 | 799 | 35 | 1 | 2.8571 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 96.6592 | 97.9424 | 95.4092 | 91.8124 | 476 | 10 | 478 | 23 | 1 | 4.3478 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 96.5410 | 97.9879 | 95.1362 | 92.5138 | 487 | 10 | 489 | 25 | 1 | 4.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 96.5214 | 98.0315 | 95.0570 | 92.5273 | 498 | 10 | 500 | 26 | 1 | 3.8462 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 95.5869 | 97.3244 | 93.9103 | 93.8991 | 291 | 8 | 293 | 19 | 1 | 5.2632 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.5756 | 97.4110 | 93.8080 | 94.4224 | 301 | 8 | 303 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.5377 | 97.4763 | 93.6747 | 94.4249 | 309 | 8 | 311 | 21 | 1 | 4.7619 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 89.3617 | 87.5000 | 91.3043 | 98.8990 | 21 | 3 | 21 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.7638 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.4342 | 93.1731 | 99.9319 | 40.7661 | 2907 | 213 | 2936 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.2496 | 92.7964 | 99.9698 | 39.4554 | 3272 | 254 | 3312 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.5718 | 97.4576 | 99.7118 | 70.3672 | 345 | 9 | 346 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4595 | 100.0000 | 98.9247 | 70.0000 | 92 | 0 | 92 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.0510 | 92.4380 | 99.9581 | 32.0604 | 2347 | 192 | 2383 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.5047 | 93.2877 | 99.9516 | 30.4275 | 2043 | 147 | 2066 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.9688 | 92.2844 | 99.9596 | 33.6636 | 2440 | 204 | 2476 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.2496 | 92.7964 | 99.9698 | 39.4554 | 3272 | 254 | 3312 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.9181 | 92.2078 | 99.9396 | 36.0371 | 1633 | 138 | 1655 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.5307 | 91.9355 | 99.4186 | 70.2936 | 171 | 15 | 171 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 96.5517 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 87.5000 | 84.8485 | 90.3226 | 93.7876 | 28 | 5 | 28 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m0_e0 | het | 82.3529 | 82.3529 | 82.3529 | 95.1429 | 14 | 3 | 14 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 94.6903 | 93.8596 | 95.5357 | 89.8274 | 107 | 7 | 107 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 92.4370 | 93.2203 | 91.6667 | 91.4408 | 55 | 4 | 55 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 94.7826 | 93.9655 | 95.6140 | 90.6404 | 109 | 7 | 109 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 92.6829 | 93.4426 | 91.9355 | 92.0308 | 57 | 4 | 57 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 94.7826 | 93.9655 | 95.6140 | 90.8581 | 109 | 7 | 109 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 92.6829 | 93.4426 | 91.9355 | 92.2111 | 57 | 4 | 57 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 75.8621 | 73.3333 | 78.5714 | 96.3731 | 11 | 4 | 11 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 66.6667 | 66.6667 | 96.8085 | 6 | 3 | 6 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 90.3846 | 88.6792 | 92.1569 | 93.5361 | 47 | 6 | 47 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 86.6667 | 86.6667 | 86.6667 | 94.3609 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 90.3846 | 88.6792 | 92.1569 | 94.3080 | 47 | 6 | 47 | 4 | 1 | 25.0000 | |