PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34951-35000 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.9827 | 98.8372 | 97.1429 | 80.2036 | 170 | 2 | 170 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3925 | 99.2718 | 99.5134 | 71.4682 | 818 | 6 | 818 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7238 | 100.0000 | 99.4490 | 62.8074 | 361 | 0 | 361 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 91.6464 | 84.7380 | 99.7812 | 34.5272 | 372 | 67 | 456 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7179 | 98.0892 | 99.3548 | 70.4198 | 154 | 3 | 154 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3329 | 98.3607 | 98.3051 | 81.7901 | 60 | 1 | 58 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 78.9474 | 75.0000 | 83.3333 | 90.9091 | 6 | 2 | 5 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 48.1481 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.3662 | 90.5405 | 98.5294 | 79.5181 | 67 | 7 | 67 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.4444 | 91.8919 | 97.1429 | 86.3281 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8647 | 100.0000 | 99.7297 | 82.0301 | 369 | 0 | 369 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8282 | 99.7547 | 99.9018 | 44.3519 | 4067 | 10 | 4070 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3478 | 98.9177 | 99.7817 | 28.1005 | 457 | 5 | 457 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 94.0671 | 98.5507 | 89.9736 | 92.9238 | 340 | 5 | 341 | 38 | 1 | 2.6316 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 94.0364 | 97.9239 | 90.4459 | 94.1809 | 283 | 6 | 284 | 30 | 1 | 3.3333 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.2249 | 97.6471 | 98.8095 | 90.4328 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.6726 | 97.8070 | 99.5536 | 87.8128 | 223 | 5 | 223 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.7500 | 97.9339 | 99.5798 | 88.4466 | 237 | 5 | 237 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 92.9972 | 97.0760 | 89.2473 | 96.8555 | 166 | 5 | 166 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 91.2863 | 99.0991 | 84.6154 | 97.2792 | 110 | 1 | 110 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 93.4726 | 97.2826 | 89.9497 | 97.0218 | 179 | 5 | 179 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 91.9540 | 99.1736 | 85.7143 | 97.3953 | 120 | 1 | 120 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 93.5065 | 97.2973 | 90.0000 | 97.0803 | 180 | 5 | 180 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 92.0152 | 99.1803 | 85.8156 | 97.4396 | 121 | 1 | 121 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8506 | 100.0000 | 97.7273 | 77.0833 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 93.3511 | 89.0909 | 98.0392 | 62.2222 | 49 | 6 | 50 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7333 | 100.0000 | 99.4681 | 59.7861 | 374 | 0 | 374 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8974 | 100.0000 | 99.7951 | 67.7888 | 487 | 0 | 487 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 90.3728 | 84.8485 | 96.6667 | 61.5385 | 28 | 5 | 29 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7093 | 100.0000 | 99.4203 | 57.5646 | 343 | 0 | 343 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 86.0332 | 75.5734 | 99.8536 | 26.3215 | 659 | 213 | 682 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0619 | 99.2481 | 98.8764 | 82.8296 | 264 | 2 | 264 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8904 | 94.5946 | 97.2222 | 61.2903 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7743 | 99.7743 | 99.7743 | 34.9486 | 442 | 1 | 442 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 46.5116 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 77.1429 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.8254 | 95.3125 | 98.3871 | 86.7804 | 61 | 3 | 61 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 87.3494 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.9697 | 95.5224 | 98.4615 | 87.2798 | 64 | 3 | 64 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.9957 | 96.5812 | 97.4138 | 92.7318 | 113 | 4 | 113 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 96.1240 | 96.8750 | 95.3846 | 94.3674 | 62 | 2 | 62 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 96.8000 | 96.0317 | 97.5806 | 92.9785 | 121 | 5 | 121 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 95.7746 | 95.7746 | 95.7746 | 94.4876 | 68 | 3 | 68 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 96.4427 | 95.3125 | 97.6000 | 93.0748 | 122 | 6 | 122 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 95.7746 | 95.7746 | 95.7746 | 94.6049 | 68 | 3 | 68 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_siren | homalt | 97.6744 | 96.9231 | 98.4375 | 84.0796 | 126 | 4 | 126 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | HG002compoundhet | hetalt | 95.6914 | 91.7821 | 99.9485 | 44.7982 | 1921 | 172 | 1941 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.2617 | 95.3704 | 97.1698 | 89.5257 | 103 | 5 | 103 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 91.8239 | 24 | 0 | 24 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.2955 | 97.1910 | 99.4253 | 81.4499 | 173 | 5 | 173 | 1 | 1 | 100.0000 | |