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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
3451-3500 / 86044 show all
ciseli-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
45.4191
32.4145
75.8496
67.6203
185838741674533342
64.1651
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
95.6615
97.9986
93.4332
70.5962
57291175677399342
85.7143
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
95.6615
97.9986
93.4332
70.5962
57291175677399342
85.7143
gduggal-snapfbSNPtvHG002complexvarhet
98.4837
99.5363
97.4531
25.4817
1500356991503383929342
8.7045
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
38.3331
34.4623
43.1834
76.0195
2381452824203184342
10.7412
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
78.6020
69.2502
90.8738
58.9733
437819443515353342
96.8839
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
78.6020
69.2502
90.8738
58.9733
437819443515353342
96.8839
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.1643
88.4244
98.4410
44.1529
12925169227215431341
79.1183
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.0337
96.0444
98.0437
49.4938
1697269918343366341
93.1694
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.0337
96.0444
98.0437
49.4938
1697269918343366341
93.1694
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.3940
99.7649
97.0603
61.7981
114572711457347341
98.2709
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
91.5762
95.2963
88.1356
47.4691
31201542808378341
90.2116
gduggal-snapplatINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
56.0755
41.6302
85.8726
84.0433
247234662480408341
83.5784
gduggal-snapfbSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.6436
98.9102
73.9737
69.3624
350333863540912458341
2.7372
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2937
95.6572
98.9872
51.0230
36256164636066369341
92.4119
jli-customINDEL**het
99.5119
99.3015
99.7232
58.0133
1927771356192389534340
63.6704
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
24.2522
20.4082
29.8805
51.4507
150585150352340
96.5909
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
73.4486
61.1425
91.9567
37.2269
443128164413386340
88.0829
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.1518
91.8431
92.4625
82.8802
263702342260552124340
16.0075
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.1518
91.8431
92.4625
82.8802
263702342260552124340
16.0075
rpoplin-dv42INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.4805
97.1646
97.7985
57.9258
1559245515593351340
96.8661
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_diTR_51to200het
60.4235
77.7551
49.4100
70.5217
381109335343340
99.1254
gduggal-snapfbSNPtiHG002compoundhet*
85.8670
98.1291
76.3290
43.9481
17151327173455379340
6.3209
gduggal-snapplatSNPtimap_l125_m0_e0*
91.6685
88.4893
95.0846
83.9409
11293146911297584340
58.2192
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
87.0050
91.1424
83.2268
80.9890
416534048411548294340
4.0994
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
87.0050
91.1424
83.2268
80.9890
416534048411548294340
4.0994
dgrover-gatkINDELD6_15**
98.3523
98.1412
98.5642
55.1444
2560748525606373340
91.1528
ckim-vqsrINDELD6_15**
98.2389
97.9189
98.5610
55.8987
2554954325548373340
91.1528
mlin-fermikitSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.9682
99.6336
96.3576
67.1524
100603710079381340
89.2388
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
83.5594
82.2599
84.9006
82.0181
21844712221395339
85.8228
qzeng-customSNPtvmap_siren*
92.0283
86.1093
98.8212
67.3017
39550638039401470339
72.1277
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
78.3548
95.3881
66.4830
78.8960
13899672139987057339
4.8037
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
78.3548
95.3881
66.4830
78.8960
13899672139987057339
4.8037
ciseli-customSNPtvmap_l150_m1_e0homalt
85.3488
82.6913
88.1828
71.9082
32636833261437339
77.5744
asubramanian-gatkINDELD1_5HG002compoundhet*
95.6905
94.4340
96.9809
66.6013
1155468111564360339
94.1667
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.3899
99.7736
97.0441
62.0464
114582611458349339
97.1347
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.2676
97.9992
98.5375
41.6126
2404949124053357339
94.9580
raldana-dualsentieonINDELI1_5HG002compoundhet*
94.0016
91.1217
97.0695
64.7141
11259109711262340339
99.7059
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
73.4052
61.1563
91.7896
37.5114
443228154416395339
85.8228
gduggal-snapfbINDELD6_15HG002complexvar*
75.6069
64.9189
90.5077
47.3259
344218603423359338
94.1504
gduggal-snapvardSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.3922
97.0358
90.0123
67.8126
539821649533805923338
5.7066
gduggal-snapvardSNP*map_l125_m2_e1*
93.7321
96.5489
91.0750
79.3697
455731629449714407338
7.6696
gduggal-snapplatSNP*HG002complexvarhomalt
98.9173
98.0729
99.7763
21.2516
2830145561282787634338
53.3123
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_51to200*
73.4367
65.0167
84.3621
45.9065
13667351845342338
98.8304
jmaeng-gatkINDELD1_5**
99.3810
99.3322
99.4300
61.6387
145765980145820836338
40.4306
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.6405
97.3120
97.9712
57.8582
1719647517191356338
94.9438
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.6405
97.3120
97.9712
57.8582
1719647517191356338
94.9438
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
79.4418
90.8058
70.6058
71.2226
87989944393338
86.0051
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.4920
97.0234
97.9652
58.1135
1714552617140356338
94.9438
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.4920
97.0234
97.9652
58.1135
1714552617140356338
94.9438