PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34901-34950 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.3658 | 98.8087 | 99.9291 | 27.0801 | 1410 | 17 | 1410 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 97.1631 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 97.5309 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 97.2603 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_siren | het | 95.2727 | 91.6084 | 99.2424 | 83.0116 | 131 | 12 | 131 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | * | hetalt | 99.8277 | 99.7704 | 99.8851 | 43.3225 | 869 | 2 | 869 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7133 | 99.4851 | 99.9425 | 62.4676 | 1739 | 9 | 1739 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.5467 | 99.6973 | 99.3965 | 52.0107 | 4282 | 13 | 4282 | 26 | 1 | 3.8462 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.9067 | 99.8757 | 99.9378 | 47.2268 | 1607 | 2 | 1607 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.8082 | 99.6679 | 99.9488 | 76.8939 | 3902 | 13 | 3902 | 2 | 1 | 50.0000 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9270 | 99.9635 | 30.9710 | 2736 | 2 | 2736 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l100_m0_e0 | hetalt | 96.9697 | 100.0000 | 94.1176 | 71.1864 | 16 | 0 | 16 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l100_m1_e0 | hetalt | 98.7952 | 100.0000 | 97.6190 | 72.5490 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l100_m2_e0 | hetalt | 98.8235 | 100.0000 | 97.6744 | 75.2874 | 42 | 0 | 42 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l100_m2_e1 | hetalt | 98.8506 | 100.0000 | 97.7273 | 74.8571 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_siren | hetalt | 98.7654 | 98.7654 | 98.7654 | 71.5789 | 80 | 1 | 80 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | * | hetalt | 99.7420 | 99.6564 | 99.8279 | 42.8150 | 580 | 2 | 580 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6313 | 99.3464 | 99.9178 | 60.7293 | 1216 | 8 | 1216 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.5947 | 99.6620 | 99.5275 | 51.8290 | 2949 | 10 | 2949 | 14 | 1 | 7.1429 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8670 | 99.8227 | 99.9113 | 46.4608 | 1126 | 2 | 1126 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.8135 | 99.6690 | 99.9585 | 74.2163 | 2409 | 8 | 2409 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8769 | 99.7786 | 99.9754 | 44.9525 | 4056 | 9 | 4056 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5868 | 99.9441 | 99.2321 | 39.7088 | 10726 | 6 | 10726 | 83 | 1 | 1.2048 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3587 | 99.9407 | 98.7835 | 42.3002 | 6740 | 4 | 6740 | 83 | 1 | 1.2048 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8465 | 99.8976 | 99.7954 | 28.9038 | 3902 | 4 | 3903 | 8 | 1 | 12.5000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9650 | 100.0000 | 99.9300 | 27.1057 | 1427 | 0 | 1427 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | map_l100_m0_e0 | hetalt | 96.5517 | 100.0000 | 93.3333 | 66.6667 | 14 | 0 | 14 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | map_l100_m1_e0 | hetalt | 98.3051 | 100.0000 | 96.6667 | 70.5882 | 29 | 0 | 29 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | map_l100_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 72.8070 | 30 | 0 | 30 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | map_l100_m2_e1 | hetalt | 98.4127 | 100.0000 | 96.8750 | 72.1739 | 31 | 0 | 31 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | map_siren | hetalt | 98.2456 | 98.2456 | 98.2456 | 70.4663 | 56 | 1 | 56 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 44.4444 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 41.6667 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | * | hetalt | 99.8277 | 99.7704 | 99.8851 | 43.3225 | 869 | 2 | 869 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.9793 | 99.8507 | 96.1768 | 39.7598 | 4682 | 7 | 4679 | 186 | 1 | 0.5376 | |
| jli-custom | SNP | tv | map_l100_m0_e0 | hetalt | 96.9697 | 100.0000 | 94.1176 | 71.1864 | 16 | 0 | 16 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_l100_m1_e0 | hetalt | 98.7952 | 100.0000 | 97.6190 | 72.5490 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_l100_m2_e0 | hetalt | 98.8235 | 100.0000 | 97.6744 | 75.2874 | 42 | 0 | 42 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_l100_m2_e1 | hetalt | 98.8506 | 100.0000 | 97.7273 | 74.8571 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_siren | hetalt | 98.7654 | 98.7654 | 98.7654 | 71.5789 | 80 | 1 | 80 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 52.9801 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.2500 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.1217 | 89.2704 | 99.5305 | 73.3750 | 208 | 25 | 212 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8830 | 99.8129 | 99.9531 | 76.9081 | 2134 | 4 | 2132 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.4506 | 90.1515 | 99.1803 | 77.1107 | 119 | 13 | 121 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.2940 | 96.7497 | 99.8884 | 27.0952 | 893 | 30 | 895 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m0_e0 | het | 92.7708 | 97.3607 | 88.5942 | 95.5715 | 332 | 9 | 334 | 43 | 1 | 2.3256 | |
| jmaeng-gatk | INDEL | * | map_l250_m0_e0 | het | 84.4828 | 92.4528 | 77.7778 | 98.7390 | 49 | 4 | 49 | 14 | 1 | 7.1429 | |
| jmaeng-gatk | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.5248 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9695 | 96.0199 | 97.9381 | 88.9898 | 193 | 8 | 190 | 4 | 1 | 25.0000 | |