PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34601-34650 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 91.4286 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 93.0435 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m1_e0 | homalt | 89.7959 | 84.6154 | 95.6522 | 88.2653 | 22 | 4 | 22 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m0_e0 | * | 84.5070 | 83.3333 | 85.7143 | 97.8125 | 5 | 1 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m0_e0 | het | 77.4194 | 75.0000 | 80.0000 | 98.0695 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 94.2857 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | homalt | 92.3077 | 100.0000 | 85.7143 | 94.2149 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | homalt | 92.3077 | 100.0000 | 85.7143 | 94.2623 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | tech_badpromoters | het | 62.5000 | 50.0000 | 83.3333 | 14.2857 | 5 | 5 | 5 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | func_cds | * | 44.4444 | 33.3333 | 66.6667 | 50.0000 | 4 | 8 | 4 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I16_PLUS | func_cds | homalt | 40.0000 | 50.0000 | 33.3333 | 66.6667 | 1 | 1 | 1 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 13.6986 | 9.0909 | 27.7778 | 57.1429 | 6 | 60 | 5 | 13 | 1 | 7.6923 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 87.5000 | 0 | 27 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 1 | 0 | 3 | 1 | 33.3333 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 50.0000 | 0 | 26 | 0 | 2 | 1 | 50.0000 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 66.6667 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 10.8696 | 6.2500 | 41.6667 | 53.8462 | 1 | 15 | 5 | 7 | 1 | 14.2857 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m0_e0 | * | 33.3333 | 25.0000 | 50.0000 | 77.7778 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 50.0000 | 66.6667 | 0 | 1 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 88.8889 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 83.3333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | INDEL | I16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 90.9091 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 90.9091 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | INDEL | I16_PLUS | tech_badpromoters | * | 33.3333 | 25.0000 | 50.0000 | 0.0000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | INDEL | I1_5 | tech_badpromoters | het | 37.5000 | 25.0000 | 75.0000 | 69.2308 | 2 | 6 | 3 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 77.7778 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 25.8065 | 15.3846 | 80.0000 | 37.5000 | 2 | 11 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 88.8889 | 100.0000 | 80.0000 | 28.5714 | 1 | 0 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | map_l100_m0_e0 | het | 50.0000 | 41.1765 | 63.6364 | 87.5706 | 7 | 10 | 14 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m0_e0 | het | 51.9481 | 44.4444 | 62.5000 | 88.7324 | 4 | 5 | 10 | 6 | 1 | 16.6667 | |
| anovak-vg | INDEL | I6_15 | map_l150_m0_e0 | * | 72.0000 | 75.0000 | 69.2308 | 92.6966 | 6 | 2 | 9 | 4 | 1 | 25.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m0_e0 | het | 63.8298 | 75.0000 | 55.5556 | 92.7419 | 3 | 1 | 5 | 4 | 1 | 25.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m1_e0 | het | 54.4218 | 53.3333 | 55.5556 | 90.8163 | 8 | 7 | 10 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m1_e0 | homalt | 74.4681 | 71.4286 | 77.7778 | 91.4286 | 5 | 2 | 7 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e0 | het | 54.4218 | 53.3333 | 55.5556 | 91.7431 | 8 | 7 | 10 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e0 | homalt | 74.4681 | 71.4286 | 77.7778 | 92.8000 | 5 | 2 | 7 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e1 | het | 52.6316 | 50.0000 | 55.5556 | 91.9283 | 8 | 8 | 10 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | I6_15 | map_l250_m1_e0 | * | 48.9796 | 42.8571 | 57.1429 | 96.3918 | 3 | 4 | 4 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | I6_15 | map_l250_m1_e0 | het | 30.7692 | 25.0000 | 40.0000 | 96.1538 | 1 | 3 | 2 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | I6_15 | map_l250_m2_e0 | * | 53.3333 | 50.0000 | 57.1429 | 96.6825 | 4 | 4 | 4 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | I6_15 | map_l250_m2_e0 | het | 40.0000 | 40.0000 | 40.0000 | 96.4286 | 2 | 3 | 2 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | I6_15 | map_l250_m2_e1 | * | 53.3333 | 50.0000 | 57.1429 | 96.8037 | 4 | 4 | 4 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | I6_15 | map_l250_m2_e1 | het | 40.0000 | 40.0000 | 40.0000 | 96.5517 | 2 | 3 | 2 | 3 | 1 | 33.3333 | |
| anovak-vg | SNP | * | decoy | * | 0.0000 | 0.0000 | 50.0000 | 99.9991 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | * | decoy | het | 0.0000 | 0.0000 | 99.9995 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 74.0741 | 66.6667 | 83.3333 | 95.0000 | 10 | 5 | 10 | 2 | 1 | 50.0000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 50.0000 | 50.0000 | 50.0000 | 94.1176 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |