PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33751-33800 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e0 | het | 33.3333 | 21.4286 | 75.0000 | 98.3607 | 3 | 11 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e1 | * | 41.3793 | 27.2727 | 85.7143 | 97.7848 | 6 | 16 | 6 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e1 | het | 33.3333 | 21.4286 | 75.0000 | 98.3806 | 3 | 11 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_siren | hetalt | 74.2364 | 59.5960 | 98.4127 | 73.9669 | 59 | 40 | 62 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_siren | homalt | 62.1053 | 45.3846 | 98.3333 | 70.5882 | 59 | 71 | 59 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 84.3750 | 77.1429 | 93.1034 | 76.8000 | 27 | 8 | 27 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 84.6997 | 77.5281 | 93.3333 | 61.1399 | 69 | 20 | 70 | 5 | 1 | 20.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.9091 | 93.7500 | 88.2353 | 65.3061 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 70.5909 | 54.8571 | 98.9796 | 54.4186 | 96 | 79 | 97 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 72.3288 | 59.4595 | 92.3077 | 71.1111 | 22 | 15 | 24 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 71.4286 | 62.5000 | 83.3333 | 72.7273 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 91.8736 | 85.1464 | 99.7549 | 69.6654 | 407 | 71 | 407 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.9012 | 86.9942 | 99.6689 | 73.6704 | 301 | 45 | 301 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 67.9365 | 51.9417 | 98.1651 | 46.0396 | 107 | 99 | 107 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 64.5069 | 48.0447 | 98.1308 | 30.0654 | 86 | 93 | 105 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 96.1516 | 93.6330 | 98.8095 | 54.5946 | 250 | 17 | 249 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 88.8889 | 88.8889 | 88.8889 | 91.7431 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m0_e0 | homalt | 74.4048 | 60.0962 | 97.6562 | 75.2418 | 125 | 83 | 125 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | het | 89.1566 | 80.9524 | 99.2114 | 85.2042 | 629 | 148 | 629 | 5 | 1 | 20.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e0 | het | 89.3971 | 81.3367 | 99.2308 | 86.3273 | 645 | 148 | 645 | 5 | 1 | 20.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | het | 89.3559 | 81.3580 | 99.0977 | 86.3869 | 659 | 151 | 659 | 6 | 1 | 16.6667 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | het | 85.6476 | 75.5144 | 98.9218 | 88.5352 | 367 | 119 | 367 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 90.9091 | 88.2353 | 93.7500 | 90.8571 | 15 | 2 | 15 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | het | 86.0068 | 76.0563 | 98.9529 | 89.5285 | 378 | 119 | 378 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 88.8889 | 84.2105 | 94.1176 | 91.7476 | 16 | 3 | 16 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e1 | het | 86.2222 | 76.3780 | 98.9796 | 89.4962 | 388 | 120 | 388 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 88.8889 | 84.2105 | 94.1176 | 92.0188 | 16 | 3 | 16 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | * | 77.6978 | 64.0316 | 98.7805 | 90.5503 | 324 | 182 | 324 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | het | 81.9608 | 69.8997 | 99.0521 | 91.9924 | 209 | 90 | 209 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | * | 77.9463 | 64.3545 | 98.8166 | 91.4754 | 334 | 185 | 334 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | het | 82.4197 | 70.5502 | 99.0909 | 92.6224 | 218 | 91 | 218 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | * | 78.2708 | 64.7834 | 98.8506 | 91.4496 | 344 | 187 | 344 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | het | 82.5046 | 70.6625 | 99.1150 | 92.6095 | 224 | 93 | 224 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.3433 | 50.9434 | 99.3151 | 42.0635 | 270 | 260 | 290 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.0734 | 81.3559 | 96.0000 | 63.2353 | 48 | 11 | 48 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 76.5438 | 63.9344 | 95.3488 | 51.1364 | 39 | 22 | 41 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 83.1081 | 75.0000 | 93.1818 | 44.3038 | 39 | 13 | 41 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2480 | 97.5124 | 96.9849 | 88.9751 | 196 | 5 | 193 | 6 | 1 | 16.6667 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7101 | 100.0000 | 99.4220 | 81.3578 | 172 | 0 | 172 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5140 | 99.3932 | 99.6350 | 71.6258 | 819 | 5 | 819 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7238 | 100.0000 | 99.4490 | 62.9592 | 361 | 0 | 361 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 93.3540 | 87.6993 | 99.7881 | 34.6260 | 385 | 54 | 471 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2375 | 99.0025 | 99.4737 | 82.2678 | 397 | 4 | 378 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.1875 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 50.0000 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | het | 90.9091 | 100.0000 | 83.3333 | 97.3897 | 37 | 0 | 35 | 7 | 1 | 14.2857 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 96.5699 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.1049 | 91.8919 | 98.5507 | 79.7654 | 68 | 6 | 68 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7250 | 99.6337 | 99.8165 | 78.0419 | 544 | 2 | 544 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8588 | 99.8119 | 99.9058 | 81.3717 | 1061 | 2 | 1061 | 1 | 1 | 100.0000 | |