PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33601-33650 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.0711 | 95.0820 | 99.1453 | 62.8571 | 116 | 6 | 116 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | het | 94.7368 | 91.5254 | 98.1818 | 84.8485 | 54 | 5 | 54 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 84.7291 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | het | 94.9153 | 91.8033 | 98.2456 | 85.7143 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 86.4035 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | het | 94.9153 | 91.8033 | 98.2456 | 85.9606 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.7500 | 90.9091 | 96.7742 | 86.6379 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | het | 95.2727 | 91.6084 | 99.2424 | 83.0769 | 131 | 12 | 131 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | HG002compoundhet | hetalt | 99.5928 | 99.3039 | 99.8833 | 23.6185 | 856 | 6 | 856 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 80.2817 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7823 | 99.6892 | 99.8755 | 54.6328 | 1604 | 5 | 1604 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7332 | 99.6004 | 99.8664 | 53.4604 | 2243 | 9 | 2243 | 3 | 1 | 33.3333 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.6740 | 99.4939 | 99.8549 | 58.0900 | 1376 | 7 | 1376 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.7143 | 77.7778 | 95.4545 | 96.1268 | 21 | 6 | 21 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.7143 | 80.0000 | 92.3077 | 93.4673 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 84.9315 | 75.6098 | 96.8750 | 91.1602 | 31 | 10 | 31 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 81.0127 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l100_m1_e0 | hetalt | 95.0000 | 92.6829 | 97.4359 | 77.5862 | 38 | 3 | 38 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l100_m2_e0 | hetalt | 95.1220 | 92.8571 | 97.5000 | 79.6954 | 39 | 3 | 39 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l100_m2_e1 | hetalt | 95.2381 | 93.0233 | 97.5610 | 79.3970 | 40 | 3 | 40 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_siren | hetalt | 96.2025 | 93.8272 | 98.7013 | 75.7098 | 76 | 5 | 76 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 100.0000 | 85.7143 | 81.5789 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.4011 | 99.6723 | 99.1314 | 60.3701 | 1825 | 6 | 1826 | 16 | 1 | 6.2500 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8670 | 99.8227 | 99.9113 | 54.5565 | 1126 | 2 | 1126 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7268 | 99.5907 | 99.8632 | 46.2500 | 1460 | 6 | 1460 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5914 | 99.4172 | 99.7661 | 48.7717 | 853 | 5 | 853 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.6667 | 81.2500 | 92.8571 | 96.5432 | 13 | 3 | 13 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 84.2105 | 80.0000 | 88.8889 | 97.0000 | 8 | 2 | 8 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 71.4286 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6923 | 99.5392 | 99.8459 | 28.7987 | 3888 | 18 | 3888 | 6 | 1 | 16.6667 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5956 | 99.3947 | 99.7973 | 28.9459 | 2463 | 15 | 2462 | 5 | 1 | 20.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 77.1930 | 12 | 2 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m1_e0 | hetalt | 94.7368 | 93.1034 | 96.4286 | 76.8595 | 27 | 2 | 27 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e0 | hetalt | 94.9153 | 93.3333 | 96.5517 | 78.9855 | 28 | 2 | 28 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e1 | hetalt | 95.0820 | 93.5484 | 96.6667 | 78.5714 | 29 | 2 | 29 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l250_m0_e0 | het | 97.7729 | 96.3597 | 99.2282 | 93.4065 | 900 | 34 | 900 | 7 | 1 | 14.2857 | |
| egarrison-hhga | SNP | ti | map_siren | hetalt | 95.4955 | 92.9825 | 98.1481 | 75.0000 | 53 | 4 | 53 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | HG002compoundhet | hetalt | 99.5928 | 99.3039 | 99.8833 | 23.6185 | 856 | 6 | 856 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 80.2817 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.2878 | 89.5161 | 97.3913 | 86.9615 | 111 | 13 | 112 | 3 | 1 | 33.3333 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.1064 | 76.9231 | 95.2381 | 94.1989 | 20 | 6 | 20 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.3529 | 77.7778 | 87.5000 | 91.4894 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 88.2353 | 83.3333 | 93.7500 | 86.7769 | 30 | 6 | 30 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 72.7273 | 66.6667 | 80.0000 | 94.1860 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7240 | 99.4783 | 99.9709 | 35.3959 | 3432 | 18 | 3434 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6482 | 99.3452 | 99.9530 | 35.3102 | 2124 | 14 | 2126 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 81.0127 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m1_e0 | hetalt | 95.0000 | 92.6829 | 97.4359 | 77.5862 | 38 | 3 | 38 | 1 | 1 | 100.0000 | |