PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33401-33450 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | tv | map_l150_m2_e1 | het | 98.6349 | 98.8432 | 98.4275 | 78.2306 | 7263 | 85 | 7261 | 116 | 1 | 0.8621 | |
| raldana-dualsentieon | SNP | tv | map_l250_m0_e0 | het | 96.7458 | 96.1538 | 97.3451 | 92.1972 | 550 | 22 | 550 | 15 | 1 | 6.6667 | |
| raldana-dualsentieon | SNP | tv | map_l250_m0_e0 | homalt | 98.1818 | 97.9275 | 98.4375 | 91.2528 | 189 | 4 | 189 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | map_l250_m1_e0 | het | 97.2943 | 96.5865 | 98.0125 | 88.5090 | 1726 | 61 | 1726 | 35 | 1 | 2.8571 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e0 | het | 97.4585 | 96.8557 | 98.0689 | 89.2184 | 1879 | 61 | 1879 | 37 | 1 | 2.7027 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e1 | het | 97.4661 | 96.8957 | 98.0433 | 89.2902 | 1904 | 61 | 1904 | 38 | 1 | 2.6316 | |
| raldana-dualsentieon | SNP | tv | map_siren | hetalt | 97.5000 | 96.2963 | 98.7342 | 67.0833 | 78 | 3 | 78 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 49.6454 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 50.6329 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | func_cds | homalt | 99.3348 | 99.1150 | 99.5556 | 35.7143 | 224 | 2 | 224 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.3692 | 98.9653 | 99.7765 | 72.8230 | 1339 | 14 | 1339 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 99.5208 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 96.7742 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.1211 | 89.6000 | 99.1228 | 23.4899 | 112 | 13 | 113 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.8723 | 97.8723 | 97.8723 | 51.5464 | 46 | 1 | 46 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | het | 92.4528 | 92.4528 | 92.4528 | 97.6318 | 49 | 4 | 49 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.4093 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_siren | hetalt | 93.4218 | 89.0688 | 98.2222 | 87.9936 | 220 | 27 | 221 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | INDEL | * | tech_badpromoters | * | 98.6842 | 98.6842 | 98.6842 | 90.5824 | 75 | 1 | 75 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | tech_badpromoters | het | 98.7342 | 100.0000 | 97.5000 | 49.3671 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 57.1429 | 50.0000 | 66.6667 | 97.9021 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.9381 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2837 | 98.7939 | 99.7785 | 64.4068 | 901 | 11 | 901 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 57.1429 | 50.0000 | 66.6667 | 97.8102 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.8495 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4571 | 99.1342 | 99.7821 | 56.9822 | 458 | 4 | 458 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3711 | 98.9975 | 99.7475 | 60.5184 | 395 | 4 | 395 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 88.7097 | 80.8824 | 98.2143 | 96.7098 | 55 | 13 | 55 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 87.5000 | 79.5455 | 97.2222 | 97.0322 | 35 | 9 | 35 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.4315 | 92.1569 | 98.9474 | 60.0840 | 94 | 8 | 94 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.7492 | 96.8153 | 98.7013 | 59.0426 | 152 | 5 | 152 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.6940 | 96.7213 | 96.6667 | 70.2970 | 59 | 2 | 58 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 33.3333 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 91.3295 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 87.5000 | 87.5000 | 87.5000 | 91.7526 | 14 | 2 | 14 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 87.5000 | 87.5000 | 87.5000 | 91.8367 | 14 | 2 | 14 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.8719 | 99.8294 | 99.9145 | 39.6596 | 4681 | 8 | 4676 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6190 | 97.6190 | 97.6190 | 89.3401 | 41 | 1 | 41 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 100.0000 | 85.7143 | 92.0455 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.9420 | 99.9130 | 99.9710 | 37.2906 | 3447 | 3 | 3443 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.9532 | 99.9532 | 99.9531 | 38.2523 | 2137 | 1 | 2133 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | tech_badpromoters | * | 98.6111 | 98.6111 | 98.6111 | 48.9362 | 71 | 1 | 71 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | tech_badpromoters | het | 98.5075 | 100.0000 | 97.0588 | 39.2857 | 33 | 0 | 33 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9810 | 96.5174 | 97.4490 | 87.0456 | 194 | 7 | 191 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.4186 | 99.4186 | 99.4186 | 80.4989 | 171 | 1 | 171 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3917 | 99.1505 | 99.6341 | 69.2077 | 817 | 7 | 817 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8617 | 100.0000 | 99.7238 | 62.2523 | 361 | 0 | 361 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.7835 | 99.7835 | 99.7835 | 62.5000 | 461 | 1 | 461 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.7812 | 94.0000 | 99.7319 | 34.9040 | 329 | 21 | 372 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7179 | 98.0892 | 99.3548 | 63.6150 | 154 | 3 | 154 | 1 | 1 | 100.0000 | |