PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33351-33400 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.8135 | 99.6690 | 99.9585 | 72.5387 | 2409 | 8 | 2409 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.9111 | 99.8815 | 99.9407 | 63.6892 | 1686 | 2 | 1686 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7906 | 99.6556 | 99.9260 | 45.0901 | 4051 | 14 | 4051 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2264 | 98.9027 | 99.5522 | 39.1407 | 6670 | 74 | 6670 | 30 | 1 | 3.3333 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9875 | 100.0000 | 99.9749 | 33.2441 | 3987 | 0 | 3987 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7436 | 99.6160 | 99.8716 | 27.5888 | 3891 | 15 | 3890 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9650 | 100.0000 | 99.9300 | 26.8817 | 1427 | 0 | 1427 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_l100_m0_e0 | hetalt | 96.5517 | 100.0000 | 93.3333 | 59.4595 | 14 | 0 | 14 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_l100_m1_e0 | hetalt | 98.3051 | 100.0000 | 96.6667 | 62.9630 | 29 | 0 | 29 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 65.1685 | 30 | 0 | 30 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e1 | hetalt | 98.4127 | 100.0000 | 96.8750 | 64.8352 | 31 | 0 | 31 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_l125_m0_e0 | het | 98.3262 | 98.4751 | 98.1776 | 75.7875 | 8137 | 126 | 8135 | 151 | 1 | 0.6623 | |
| raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | het | 97.9052 | 98.1362 | 97.6753 | 80.7049 | 5002 | 95 | 5000 | 119 | 1 | 0.8403 | |
| raldana-dualsentieon | SNP | ti | map_l250_m0_e0 | * | 97.4527 | 97.7372 | 97.1698 | 91.9458 | 1339 | 31 | 1339 | 39 | 1 | 2.5641 | |
| raldana-dualsentieon | SNP | ti | map_l250_m0_e0 | homalt | 98.9619 | 98.3945 | 99.5360 | 89.7625 | 429 | 7 | 429 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | homalt | 99.4375 | 99.0044 | 99.8745 | 84.1493 | 1591 | 16 | 1591 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e0 | homalt | 99.4834 | 99.0852 | 99.8847 | 85.3537 | 1733 | 16 | 1733 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | homalt | 99.4901 | 99.0971 | 99.8862 | 85.3999 | 1756 | 16 | 1756 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | map_siren | hetalt | 98.2456 | 98.2456 | 98.2456 | 65.4545 | 56 | 1 | 56 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | segdup | het | 99.4118 | 99.7672 | 99.0589 | 90.1934 | 12002 | 28 | 12000 | 114 | 1 | 0.8772 | |
| raldana-dualsentieon | SNP | ti | tech_badpromoters | * | 98.2249 | 97.6471 | 98.8095 | 42.8571 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 40.8451 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | * | hetalt | 99.7125 | 99.5408 | 99.8848 | 38.3960 | 867 | 4 | 867 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.1576 | 94.7581 | 99.6819 | 66.9239 | 940 | 52 | 940 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6183 | 99.6183 | 99.6183 | 63.0465 | 522 | 2 | 522 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.4737 | 82.4242 | 97.8417 | 90.5954 | 136 | 29 | 136 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.9955 | 78.2258 | 97.9798 | 90.3131 | 97 | 27 | 97 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3062 | 98.8166 | 99.8008 | 85.8631 | 501 | 6 | 501 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4652 | 99.1471 | 99.7854 | 85.1071 | 465 | 4 | 465 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7326 | 99.5995 | 99.8661 | 79.1457 | 1492 | 6 | 1492 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7732 | 99.6038 | 99.9432 | 60.7007 | 1760 | 7 | 1760 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7358 | 99.5014 | 99.9714 | 60.2855 | 6984 | 35 | 6981 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.4521 | 69.0476 | 93.5484 | 90.6627 | 29 | 13 | 29 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 85.7143 | 100.0000 | 75.0000 | 91.1111 | 6 | 0 | 6 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | het | 98.8033 | 98.8923 | 98.7144 | 71.7057 | 7142 | 80 | 7141 | 93 | 1 | 1.0753 | |
| raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | hetalt | 96.9697 | 100.0000 | 94.1176 | 64.5833 | 16 | 0 | 16 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m1_e0 | het | 99.1452 | 99.3189 | 98.9720 | 68.0652 | 15312 | 105 | 15308 | 159 | 1 | 0.6289 | |
| raldana-dualsentieon | SNP | tv | map_l100_m1_e0 | hetalt | 96.2963 | 95.1220 | 97.5000 | 65.5172 | 39 | 2 | 39 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | het | 99.1552 | 99.3345 | 98.9766 | 69.6214 | 15672 | 105 | 15668 | 162 | 1 | 0.6173 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | hetalt | 96.3855 | 95.2381 | 97.5610 | 68.4615 | 40 | 2 | 40 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e1 | het | 99.1544 | 99.3412 | 98.9684 | 69.6842 | 15833 | 105 | 15829 | 165 | 1 | 0.6061 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e1 | hetalt | 96.4706 | 95.3488 | 97.6190 | 68.1818 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | het | 98.3750 | 98.3640 | 98.3860 | 76.8948 | 4329 | 72 | 4328 | 71 | 1 | 1.4085 | |
| raldana-dualsentieon | SNP | tv | map_l125_m1_e0 | het | 98.8615 | 99.0618 | 98.6621 | 72.9114 | 10031 | 95 | 10029 | 136 | 1 | 0.7353 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e0 | het | 98.8912 | 99.0902 | 98.6930 | 74.4522 | 10347 | 95 | 10345 | 137 | 1 | 0.7299 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | het | 98.8982 | 99.0998 | 98.6974 | 74.5288 | 10458 | 95 | 10456 | 138 | 1 | 0.7246 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | het | 98.1142 | 97.9247 | 98.3045 | 80.9258 | 2784 | 59 | 2783 | 48 | 1 | 2.0833 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | homalt | 99.6608 | 99.5482 | 99.7736 | 73.0800 | 1322 | 6 | 1322 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | het | 98.5915 | 98.7763 | 98.4075 | 76.8439 | 6861 | 85 | 6859 | 111 | 1 | 0.9009 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e0 | het | 98.6373 | 98.8279 | 98.4474 | 78.1985 | 7167 | 85 | 7165 | 113 | 1 | 0.8850 | |