PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32951-33000 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e1 | homalt | 94.2149 | 95.0000 | 93.4426 | 93.3041 | 57 | 3 | 57 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 99.9531 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| ghariani-varprowl | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 99.9494 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.5348 | 2 | 2 | 2 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.2684 | 2 | 0 | 2 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 90.4762 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 89.4737 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 10.5263 | 90.1554 | 0 | 0 | 2 | 17 | 1 | 5.8824 | |
| gduggal-snapfb | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 22.2222 | 80.0000 | 0 | 0 | 2 | 7 | 1 | 14.2857 | |
| gduggal-snapfb | INDEL | C1_5 | HG002compoundhet | hetalt | 66.6667 | 100.0000 | 50.0000 | 86.6667 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 86.9565 | 0 | 0 | 0 | 3 | 1 | 33.3333 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 94.1176 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 83.3333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapfb | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 50.0000 | 96.1538 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 66.6667 | 97.4138 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 98.8764 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 98.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 97.9167 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 97.4138 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapfb | INDEL | D1_5 | func_cds | * | 98.4227 | 98.1132 | 98.7342 | 40.6015 | 156 | 3 | 156 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | D1_5 | func_cds | het | 98.2456 | 98.8235 | 97.6744 | 47.5610 | 84 | 1 | 84 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 77.2179 | 65.3061 | 94.4444 | 25.0000 | 32 | 17 | 17 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 73.4694 | 64.2857 | 85.7143 | 95.1389 | 9 | 5 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 74.6404 | 61.7021 | 94.4444 | 94.7674 | 29 | 18 | 17 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 75.3138 | 62.5000 | 94.7368 | 94.7368 | 30 | 18 | 18 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 72.5806 | 58.8235 | 94.7368 | 94.8087 | 30 | 21 | 18 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | * | 95.1009 | 96.4912 | 93.7500 | 94.8882 | 165 | 6 | 165 | 11 | 1 | 9.0909 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | het | 93.4498 | 96.3964 | 90.6780 | 93.2610 | 107 | 4 | 107 | 11 | 1 | 9.0909 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e0 | * | 95.1872 | 96.7391 | 93.6842 | 95.1568 | 178 | 6 | 178 | 12 | 1 | 8.3333 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e0 | het | 93.6000 | 96.6942 | 90.6977 | 93.6233 | 117 | 4 | 117 | 12 | 1 | 8.3333 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | * | 95.2128 | 96.7568 | 93.7173 | 95.2381 | 179 | 6 | 179 | 12 | 1 | 8.3333 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | het | 93.6508 | 96.7213 | 90.7692 | 93.7137 | 118 | 4 | 118 | 12 | 1 | 8.3333 | |
| gduggal-snapfb | INDEL | D1_5 | tech_badpromoters | * | 91.8919 | 89.4737 | 94.4444 | 57.1429 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | tech_badpromoters | homalt | 94.7368 | 100.0000 | 90.0000 | 47.3684 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | het | 85.0633 | 75.0000 | 98.2456 | 77.4704 | 45 | 15 | 56 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 60.2673 | 45.5882 | 88.8889 | 73.5294 | 31 | 37 | 8 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 60.2673 | 45.5882 | 88.8889 | 73.5294 | 31 | 37 | 8 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 58.9560 | 43.8356 | 90.0000 | 72.9730 | 32 | 41 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | het | 80.3709 | 68.9655 | 96.2963 | 85.1648 | 20 | 9 | 26 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m0_e0 | het | 77.1875 | 65.0000 | 95.0000 | 85.9155 | 13 | 7 | 19 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m0_e0 | homalt | 76.9231 | 71.4286 | 83.3333 | 96.2264 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m1_e0 | het | 66.6667 | 54.5455 | 85.7143 | 94.4444 | 6 | 5 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m1_e0 | homalt | 66.6667 | 60.0000 | 75.0000 | 97.4684 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e0 | het | 69.5652 | 57.1429 | 88.8889 | 93.8356 | 8 | 6 | 8 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e0 | homalt | 60.0000 | 50.0000 | 75.0000 | 97.7143 | 3 | 3 | 3 | 1 | 1 | 100.0000 | |