PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32801-32850 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D6_15 | segdup | het | 48.4621 | 36.9565 | 70.3704 | 96.6376 | 34 | 58 | 19 | 8 | 1 | 12.5000 | |
| gduggal-snapplat | INDEL | I1_5 | func_cds | * | 72.3894 | 69.4444 | 75.5952 | 55.4377 | 125 | 55 | 127 | 41 | 1 | 2.4390 | |
| gduggal-snapplat | INDEL | I1_5 | func_cds | homalt | 83.8633 | 78.1513 | 90.4762 | 30.4636 | 93 | 26 | 95 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 97.8799 | 0 | 1 | 0 | 6 | 1 | 16.6667 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 51.0638 | 44.4444 | 60.0000 | 98.6226 | 4 | 5 | 3 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m0_e0 | homalt | 86.6295 | 80.7692 | 93.4066 | 89.1538 | 168 | 40 | 170 | 12 | 1 | 8.3333 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m1_e0 | homalt | 87.6307 | 81.8533 | 94.2857 | 87.4897 | 424 | 94 | 429 | 26 | 1 | 3.8462 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e0 | homalt | 87.5010 | 81.5443 | 94.3966 | 88.3212 | 433 | 98 | 438 | 26 | 1 | 3.8462 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e1 | homalt | 87.7237 | 81.8519 | 94.5032 | 88.3469 | 442 | 98 | 447 | 26 | 1 | 3.8462 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m0_e0 | * | 82.1918 | 77.4194 | 87.5912 | 95.2848 | 240 | 70 | 240 | 34 | 1 | 2.9412 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 99.2958 | 2 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 49.5868 | 35.2941 | 83.3333 | 98.9455 | 6 | 11 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 51.5337 | 36.8421 | 85.7143 | 98.8942 | 7 | 12 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 51.5337 | 36.8421 | 85.7143 | 98.9114 | 7 | 12 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m0_e0 | * | 81.2121 | 76.1364 | 87.0130 | 96.7157 | 134 | 42 | 134 | 20 | 1 | 5.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 57.1429 | 66.6667 | 50.0000 | 99.1416 | 2 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | het | 81.0028 | 77.5920 | 84.7273 | 95.7225 | 232 | 67 | 233 | 42 | 1 | 2.3810 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 99.3392 | 3 | 6 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | het | 81.1055 | 77.6699 | 84.8592 | 96.0935 | 240 | 69 | 241 | 43 | 1 | 2.3256 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 99.4175 | 3 | 6 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e1 | het | 81.4686 | 78.2334 | 84.9829 | 96.0923 | 248 | 69 | 249 | 44 | 1 | 2.2727 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 52.1739 | 40.0000 | 75.0000 | 99.2395 | 4 | 6 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | segdup | hetalt | 56.4516 | 41.6667 | 87.5000 | 98.6644 | 20 | 28 | 21 | 3 | 1 | 33.3333 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 37.8549 | 24.4898 | 83.3333 | 85.3659 | 12 | 37 | 10 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | I6_15 | segdup | het | 37.0075 | 26.5060 | 61.2903 | 95.4210 | 22 | 61 | 19 | 12 | 1 | 8.3333 | |
| gduggal-snapplat | INDEL | I6_15 | segdup | homalt | 33.4855 | 23.4043 | 58.8235 | 93.4109 | 11 | 36 | 10 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | SNP | * | func_cds | homalt | 99.7054 | 99.4269 | 99.9856 | 21.7587 | 6939 | 40 | 6939 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 80.0000 | 76.9231 | 83.3333 | 86.3636 | 10 | 3 | 10 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 96.6667 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 21.0526 | 44.4444 | 13.7931 | 96.4198 | 4 | 5 | 4 | 25 | 1 | 4.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.1429 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e0 | hetalt | 80.0000 | 80.0000 | 80.0000 | 95.7265 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e1 | hetalt | 80.0000 | 80.0000 | 80.0000 | 95.7265 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | func_cds | homalt | 99.7435 | 99.5071 | 99.9810 | 20.2128 | 5249 | 26 | 5249 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 66.6667 | 66.6667 | 66.6667 | 88.4615 | 4 | 2 | 4 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 88.0000 | 91.6667 | 84.6154 | 94.6058 | 11 | 1 | 11 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 88.0000 | 91.6667 | 84.6154 | 94.6058 | 11 | 1 | 11 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 95.2381 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 42.1053 | 50.0000 | 36.3636 | 98.1002 | 4 | 4 | 4 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 96.2500 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e0 | hetalt | 80.0000 | 80.0000 | 80.0000 | 92.7536 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e1 | hetalt | 80.0000 | 80.0000 | 80.0000 | 92.7536 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 80.0000 | 76.9231 | 83.3333 | 86.3636 | 10 | 3 | 10 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 73.6501 | 74.6171 | 72.7079 | 81.2886 | 682 | 232 | 682 | 256 | 1 | 0.3906 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 96.6667 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapplat | SNP | tv | map_l250_m2_e0 | hetalt | 80.0000 | 80.0000 | 80.0000 | 95.7265 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |