PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32751-32800 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 94.1176 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 31.5161 | 18.7373 | 99.1071 | 42.5641 | 92 | 399 | 111 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.9599 | 92.4574 | 99.7382 | 69.8024 | 380 | 31 | 381 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 83.8710 | 72.2706 | 99.9075 | 34.6038 | 1079 | 414 | 1080 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 36.3636 | 80.0000 | 99.8480 | 4 | 7 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 60.0000 | 50.0000 | 75.0000 | 99.8441 | 4 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 61.5923 | 46.3768 | 91.6667 | 79.6610 | 32 | 37 | 33 | 3 | 1 | 33.3333 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 53.3333 | 40.0000 | 80.0000 | 99.8413 | 4 | 6 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 64.8649 | 57.1429 | 75.0000 | 99.8367 | 4 | 3 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 31.5789 | 21.4286 | 60.0000 | 98.9562 | 3 | 11 | 3 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m1_e0 | homalt | 88.8389 | 81.4189 | 97.7470 | 86.4139 | 482 | 110 | 564 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e0 | homalt | 89.1147 | 81.8331 | 97.8188 | 86.9556 | 500 | 111 | 583 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e1 | homalt | 88.9945 | 81.6129 | 97.8441 | 87.0712 | 506 | 114 | 590 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 40.0000 | 33.3333 | 50.0000 | 99.4652 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 52.6316 | 38.4615 | 83.3333 | 99.1018 | 5 | 8 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 54.5455 | 40.0000 | 85.7143 | 99.0358 | 6 | 9 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 54.5455 | 40.0000 | 85.7143 | 99.0463 | 6 | 9 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 99.3377 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 54.5455 | 42.8571 | 75.0000 | 99.2793 | 3 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 54.5455 | 42.8571 | 75.0000 | 99.3344 | 3 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 61.5385 | 50.0000 | 80.0000 | 99.1776 | 4 | 4 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | * | 60.1093 | 57.8947 | 62.5000 | 76.8116 | 11 | 8 | 10 | 6 | 1 | 16.6667 | |
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | het | 51.9481 | 62.5000 | 44.4444 | 81.2500 | 5 | 3 | 4 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 42.3077 | 28.2051 | 84.6154 | 70.4545 | 11 | 28 | 11 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 33.4604 | 24.1319 | 54.5455 | 71.7587 | 139 | 437 | 120 | 100 | 1 | 1.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 32.1041 | 23.2033 | 52.0833 | 72.0117 | 113 | 374 | 100 | 92 | 1 | 1.0870 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 42.5532 | 30.3030 | 71.4286 | 87.1560 | 10 | 23 | 10 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 33.1361 | 22.5806 | 62.2222 | 91.9210 | 35 | 120 | 28 | 17 | 1 | 5.8824 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 54.9650 | 39.1892 | 92.0000 | 88.1517 | 29 | 45 | 23 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 45.8495 | 29.7945 | 99.4253 | 32.5581 | 174 | 410 | 173 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m1_e0 | * | 38.7543 | 25.1938 | 83.9286 | 94.2915 | 65 | 193 | 47 | 9 | 1 | 11.1111 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m1_e0 | het | 43.8202 | 30.9524 | 75.0000 | 93.9394 | 39 | 87 | 27 | 9 | 1 | 11.1111 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e0 | * | 38.8774 | 25.3788 | 83.0508 | 94.3378 | 67 | 197 | 49 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e0 | het | 44.0534 | 31.2977 | 74.3590 | 93.8389 | 41 | 90 | 29 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e1 | * | 37.6750 | 24.3636 | 83.0508 | 94.4076 | 67 | 208 | 49 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e1 | het | 43.1266 | 30.3704 | 74.3590 | 93.8967 | 41 | 94 | 29 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | * | 45.1325 | 31.6239 | 78.7879 | 95.2518 | 37 | 80 | 26 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | het | 47.3921 | 35.9375 | 69.5652 | 94.6882 | 23 | 41 | 16 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | * | 45.3591 | 31.7460 | 79.4118 | 95.4485 | 40 | 86 | 27 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | het | 47.0393 | 35.2113 | 70.8333 | 94.8052 | 25 | 46 | 17 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | * | 44.8505 | 31.2500 | 79.4118 | 95.5145 | 40 | 88 | 27 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | het | 47.0393 | 35.2113 | 70.8333 | 94.8608 | 25 | 46 | 17 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m1_e0 | * | 45.0392 | 31.5068 | 78.9474 | 96.7298 | 23 | 50 | 15 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m1_e0 | het | 44.4444 | 33.3333 | 66.6667 | 96.7213 | 13 | 26 | 8 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e0 | * | 46.1771 | 32.9268 | 77.2727 | 96.4573 | 27 | 55 | 17 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e0 | het | 45.7143 | 34.7826 | 66.6667 | 96.1340 | 16 | 30 | 10 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | * | 45.0221 | 31.7647 | 77.2727 | 96.4912 | 27 | 58 | 17 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | het | 45.0704 | 34.0426 | 66.6667 | 96.1637 | 16 | 31 | 10 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_siren | homalt | 51.8357 | 35.3846 | 96.8750 | 91.1846 | 46 | 84 | 31 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | segdup | * | 57.7618 | 43.4555 | 86.1111 | 95.1968 | 83 | 108 | 62 | 10 | 1 | 10.0000 | |