PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32501-32550 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.0261 | 98.4496 | 99.6094 | 60.3101 | 254 | 4 | 255 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.9050 | 98.5348 | 99.2780 | 72.0061 | 538 | 8 | 550 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.7932 | 98.6450 | 98.9418 | 76.1965 | 364 | 5 | 374 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | homalt | 83.6672 | 72.2973 | 99.2806 | 87.5224 | 107 | 41 | 138 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 79.8653 | 67.0588 | 98.7179 | 91.2752 | 57 | 28 | 77 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 81.8253 | 70.1754 | 98.1132 | 94.2888 | 40 | 17 | 52 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e0 | homalt | 82.8773 | 71.6667 | 98.2456 | 94.4714 | 43 | 17 | 56 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e1 | homalt | 82.8881 | 71.6667 | 98.2759 | 94.5283 | 43 | 17 | 57 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | func_cds | * | 85.9267 | 90.6977 | 81.6327 | 50.0000 | 39 | 4 | 40 | 9 | 1 | 11.1111 | |
| qzeng-custom | INDEL | D6_15 | func_cds | homalt | 89.6552 | 100.0000 | 81.2500 | 50.0000 | 12 | 0 | 13 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m0_e0 | het | 79.1195 | 85.0000 | 74.0000 | 91.9094 | 51 | 9 | 74 | 26 | 1 | 3.8462 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 86.4629 | 91.6667 | 81.8182 | 85.2018 | 22 | 2 | 27 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m0_e0 | het | 78.9744 | 75.8621 | 82.3529 | 94.6875 | 22 | 7 | 42 | 9 | 1 | 11.1111 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m0_e0 | homalt | 82.2785 | 83.3333 | 81.2500 | 90.4762 | 10 | 2 | 13 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 80.9816 | 75.0000 | 88.0000 | 96.8394 | 15 | 5 | 22 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 77.9221 | 71.4286 | 85.7143 | 94.8905 | 5 | 2 | 6 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m1_e0 | homalt | 87.8327 | 84.6154 | 91.3043 | 89.7321 | 22 | 4 | 21 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m0_e0 | * | 44.4444 | 33.3333 | 66.6667 | 99.0244 | 2 | 4 | 4 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m0_e0 | het | 33.3333 | 25.0000 | 50.0000 | 99.2509 | 1 | 3 | 2 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.2492 | 92.4528 | 94.0594 | 60.0791 | 49 | 4 | 95 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 95.0820 | 100.0000 | 90.6250 | 75.3846 | 16 | 0 | 29 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 49.7946 | 72.3404 | 37.9630 | 69.8324 | 34 | 13 | 41 | 67 | 1 | 1.4925 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 49.0937 | 86.6667 | 34.2466 | 60.9626 | 13 | 2 | 25 | 48 | 1 | 2.0833 | |
| qzeng-custom | INDEL | I16_PLUS | map_siren | homalt | 69.6721 | 71.4286 | 68.0000 | 85.3801 | 15 | 6 | 17 | 8 | 1 | 12.5000 | |
| qzeng-custom | INDEL | I16_PLUS | segdup | * | 85.3598 | 91.4894 | 80.0000 | 93.4132 | 43 | 4 | 44 | 11 | 1 | 9.0909 | |
| qzeng-custom | INDEL | I16_PLUS | segdup | homalt | 87.8049 | 100.0000 | 78.2609 | 90.9091 | 19 | 0 | 18 | 5 | 1 | 20.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0728 | 99.4536 | 98.6949 | 79.7288 | 546 | 3 | 605 | 8 | 1 | 12.5000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4570 | 99.7110 | 99.2042 | 74.6128 | 345 | 1 | 374 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 95.3338 | 91.6933 | 99.2754 | 35.5140 | 287 | 26 | 137 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 73.9161 | 59.7015 | 97.0149 | 91.4650 | 40 | 27 | 65 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I6_15 | HG002complexvar | hetalt | 86.3689 | 76.2878 | 99.5200 | 53.0075 | 933 | 290 | 622 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | func_cds | homalt | 84.8485 | 93.3333 | 77.7778 | 25.0000 | 14 | 1 | 14 | 4 | 1 | 25.0000 | |
| mlin-fermikit | INDEL | D1_5 | tech_badpromoters | * | 91.8919 | 89.4737 | 94.4444 | 37.9310 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | tech_badpromoters | het | 87.5000 | 87.5000 | 87.5000 | 33.3333 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 44.9406 | 29.0138 | 99.6337 | 37.6712 | 253 | 619 | 272 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | het | 48.1928 | 36.3636 | 71.4286 | 91.4634 | 4 | 7 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 96.1538 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | het | 40.8163 | 28.5714 | 71.4286 | 92.9293 | 4 | 10 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | het | 40.8163 | 28.5714 | 71.4286 | 93.0693 | 4 | 10 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.8330 | 91.6667 | 92.0000 | 89.1775 | 22 | 2 | 23 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6930 | 94.2857 | 97.1429 | 83.7209 | 33 | 2 | 34 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.1429 | 100.0000 | 94.4444 | 80.6452 | 16 | 0 | 17 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 43.6519 | 28.8136 | 90.0000 | 80.0000 | 17 | 42 | 18 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 96.4286 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 58.7413 | 42.8571 | 93.3333 | 65.1163 | 12 | 16 | 14 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 28.7770 | 17.3913 | 83.3333 | 89.0909 | 4 | 19 | 5 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 33.3333 | 25.0000 | 50.0000 | 80.0000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 83.3333 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | het | 66.6667 | 62.5000 | 71.4286 | 82.9268 | 5 | 3 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 40.0000 | 50.0000 | 33.3333 | 89.6552 | 1 | 1 | 1 | 2 | 1 | 50.0000 | |