PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32151-32200 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 47.6190 | 50.0000 | 45.4545 | 98.2026 | 5 | 5 | 5 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 75.0000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6843 | 99.5795 | 99.7893 | 29.7830 | 1421 | 6 | 1421 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.9362 | 96.0801 | 0 | 0 | 93 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 97.9167 | 95.8478 | 0 | 0 | 47 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 98.1132 | 96.0015 | 0 | 0 | 104 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 98.1132 | 95.6414 | 0 | 0 | 52 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 66.6667 | 98.0263 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 50.0000 | 97.7528 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | HG002complexvar | homalt | 96.9739 | 94.4637 | 99.6212 | 60.8309 | 273 | 16 | 263 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.7599 | 95.7237 | 99.8847 | 53.2615 | 873 | 39 | 866 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.2977 | 92.4479 | 98.3287 | 77.4356 | 355 | 29 | 353 | 6 | 1 | 16.6667 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 95.1497 | 91.2791 | 99.3631 | 71.2980 | 157 | 15 | 156 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.9599 | 98.1796 | 99.7528 | 64.8872 | 809 | 15 | 807 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7409 | 97.7839 | 99.7167 | 56.1491 | 353 | 8 | 352 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.6847 | 74.0157 | 98.9474 | 35.8108 | 94 | 33 | 94 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.0362 | 72.0588 | 97.9592 | 95.6980 | 49 | 19 | 48 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 75.0000 | 66.6667 | 85.7143 | 95.2055 | 6 | 3 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.0103 | 96.5217 | 99.5455 | 56.9472 | 222 | 8 | 219 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.8690 | 94.5122 | 99.3464 | 73.7564 | 155 | 9 | 152 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.4668 | 94.1176 | 98.9362 | 52.2843 | 96 | 6 | 93 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.9540 | 86.9565 | 97.5610 | 48.7500 | 40 | 6 | 40 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 75.0000 | 85.7143 | 78.7879 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.0008 | 80.4598 | 97.1014 | 83.0882 | 70 | 17 | 67 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 91.9717 | 89.1304 | 95.0000 | 84.6743 | 41 | 5 | 38 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.0856 | 78.8889 | 97.1831 | 84.3612 | 71 | 19 | 69 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 91.2052 | 87.5000 | 95.2381 | 86.0000 | 42 | 6 | 40 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.4735 | 79.3814 | 97.4026 | 83.5118 | 77 | 20 | 75 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 91.7496 | 88.2353 | 95.5556 | 85.3420 | 45 | 6 | 43 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | segdup | * | 96.5517 | 96.5517 | 96.5517 | 91.9332 | 56 | 2 | 56 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | segdup | het | 96.0000 | 97.2973 | 94.7368 | 91.8630 | 36 | 1 | 36 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.5569 | 96.5517 | 94.5824 | 66.8413 | 420 | 15 | 419 | 24 | 1 | 4.1667 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.6129 | 91.8919 | 97.5000 | 91.7184 | 34 | 3 | 39 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.9834 | 98.4772 | 99.4949 | 54.7945 | 194 | 3 | 197 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5386 | 99.2998 | 99.7786 | 39.6095 | 2269 | 16 | 2253 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3495 | 98.9177 | 99.7849 | 42.8747 | 457 | 5 | 464 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | * | 97.7664 | 96.4079 | 99.1637 | 75.6190 | 832 | 31 | 830 | 7 | 1 | 14.2857 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.6294 | 97.6744 | 99.6032 | 75.2456 | 252 | 6 | 251 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.1106 | 96.9697 | 99.2786 | 76.3393 | 1792 | 56 | 1789 | 13 | 1 | 7.6923 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 98.8920 | 97.9730 | 99.8285 | 75.6067 | 580 | 12 | 582 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e0 | het | 97.9878 | 97.0541 | 98.9396 | 75.7755 | 1219 | 37 | 1213 | 13 | 1 | 7.6923 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 98.8432 | 97.8723 | 99.8336 | 76.9113 | 598 | 13 | 600 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | het | 97.9674 | 97.0820 | 98.8691 | 75.9144 | 1231 | 37 | 1224 | 14 | 1 | 7.1429 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.8603 | 97.9032 | 99.8363 | 77.0646 | 607 | 13 | 610 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | * | 97.4313 | 95.5645 | 99.3724 | 79.4409 | 474 | 22 | 475 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.2935 | 97.2973 | 99.3103 | 79.6919 | 144 | 4 | 144 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.0469 | 96.8750 | 99.2474 | 78.8205 | 1054 | 34 | 1055 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.6971 | 97.7077 | 99.7067 | 78.8724 | 341 | 8 | 340 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.0968 | 96.9379 | 99.2838 | 80.1281 | 1108 | 35 | 1109 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.7513 | 97.8022 | 99.7191 | 80.2770 | 356 | 8 | 355 | 1 | 1 | 100.0000 | |