PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31951-32000 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e1 | homalt | 96.7506 | 95.0980 | 98.4615 | 83.4746 | 194 | 10 | 192 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m1_e0 | homalt | 94.2529 | 93.1818 | 95.3488 | 91.6988 | 41 | 3 | 41 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e0 | homalt | 94.3820 | 93.3333 | 95.4545 | 92.6789 | 42 | 3 | 42 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.5055 | 93.4783 | 95.5556 | 92.6948 | 43 | 3 | 43 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 46.3415 | 30.3191 | 98.2759 | 68.9840 | 57 | 131 | 57 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 72.1992 | 56.8627 | 98.8636 | 64.0816 | 87 | 66 | 87 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 61.3398 | 44.4444 | 98.9583 | 52.7094 | 96 | 120 | 95 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 80.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.5181 | 97.1512 | 99.9239 | 28.2478 | 2660 | 78 | 2627 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | * | tech_badpromoters | * | 93.2795 | 88.5350 | 98.5612 | 47.3485 | 139 | 18 | 137 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | * | tech_badpromoters | het | 93.2432 | 89.6104 | 97.1831 | 51.0345 | 69 | 8 | 69 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.7317 | 51.4286 | 95.0000 | 93.4641 | 18 | 17 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | ti | tech_badpromoters | * | 94.4785 | 90.5882 | 98.7179 | 44.6809 | 77 | 8 | 77 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | ti | tech_badpromoters | het | 95.3488 | 93.1818 | 97.6190 | 48.7805 | 41 | 3 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.2739 | 87.8049 | 97.2222 | 88.5350 | 36 | 5 | 35 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.0574 | 87.2068 | 99.7494 | 78.9889 | 409 | 60 | 398 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.7441 | 95.6423 | 99.9404 | 50.0892 | 1690 | 77 | 1677 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 89.4737 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.6609 | 95.5759 | 99.8390 | 31.3433 | 1253 | 58 | 1240 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | hetalt | 64.0000 | 72.7273 | 57.1429 | 96.1111 | 8 | 3 | 4 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | * | map_l125_m1_e0 | hetalt | 76.4505 | 70.0000 | 84.2105 | 94.8925 | 28 | 12 | 16 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | hetalt | 76.1978 | 69.0476 | 85.0000 | 95.2719 | 29 | 13 | 17 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | hetalt | 75.2098 | 67.4419 | 85.0000 | 95.3271 | 29 | 14 | 17 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | hetalt | 76.3636 | 77.7778 | 75.0000 | 96.9697 | 7 | 2 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | hetalt | 76.5957 | 66.6667 | 90.0000 | 96.6102 | 14 | 7 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | hetalt | 76.5957 | 66.6667 | 90.0000 | 97.0760 | 14 | 7 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e1 | hetalt | 75.9494 | 65.2174 | 90.9091 | 96.8300 | 15 | 8 | 10 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m0_e0 | * | 89.4737 | 87.1795 | 91.8919 | 97.7384 | 68 | 10 | 68 | 6 | 1 | 16.6667 | |
| gduggal-snapfb | INDEL | * | map_l250_m0_e0 | het | 87.6190 | 86.7925 | 88.4615 | 96.4817 | 46 | 7 | 46 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 87.9792 | 78.9116 | 99.4012 | 47.6489 | 1276 | 341 | 166 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 92.8290 | 88.0297 | 98.1818 | 57.6923 | 831 | 113 | 54 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 91.8155 | 86.2245 | 98.1818 | 60.1449 | 676 | 108 | 54 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 86.1595 | 76.9231 | 97.9167 | 68.0000 | 40 | 12 | 47 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 93.3333 | 91.3043 | 95.4545 | 78.4314 | 21 | 2 | 21 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 59.4214 | 43.1818 | 95.2381 | 93.9481 | 19 | 25 | 20 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 75.2137 | 86.2745 | 66.6667 | 57.1429 | 44 | 7 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.2529 | 91.1111 | 97.6190 | 51.7241 | 41 | 4 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 81.1268 | 69.5652 | 97.2973 | 43.0769 | 32 | 14 | 36 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 36.3636 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.7879 | 68.4211 | 92.8571 | 86.4078 | 13 | 6 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 94.2529 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m0_e0 | * | 86.9565 | 83.3333 | 90.9091 | 90.9091 | 10 | 2 | 10 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 94.6429 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m1_e0 | het | 86.7470 | 80.0000 | 94.7368 | 83.8983 | 16 | 4 | 18 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 96.0784 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e0 | het | 86.7470 | 80.0000 | 94.7368 | 84.6774 | 16 | 4 | 18 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 96.2264 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | het | 86.7470 | 80.0000 | 94.7368 | 84.8000 | 16 | 4 | 18 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 75.0000 | 75.0000 | 96.2617 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m1_e0 | * | 81.4815 | 73.3333 | 91.6667 | 92.2581 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |