PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31701-31750 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7742 | 100.0000 | 93.7500 | 90.1840 | 1 | 0 | 15 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 54.7264 | 68.7500 | 45.4545 | 94.3445 | 11 | 5 | 10 | 12 | 1 | 8.3333 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.5000 | 100.0000 | 45.4545 | 82.5397 | 6 | 0 | 5 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 64.2322 | 80.3030 | 53.5211 | 95.5261 | 53 | 13 | 38 | 33 | 1 | 3.0303 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 100.0000 | 50.0000 | 97.1264 | 8 | 0 | 5 | 5 | 1 | 20.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 33.3333 | 100.0000 | 20.0000 | 90.3846 | 2 | 0 | 1 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m1_e0 | hetalt | 99.8088 | 100.0000 | 99.6183 | 63.7119 | 29 | 0 | 261 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e0 | hetalt | 99.8165 | 100.0000 | 99.6337 | 65.9176 | 30 | 0 | 272 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e1 | hetalt | 99.8192 | 100.0000 | 99.6390 | 65.8025 | 31 | 0 | 276 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | * | 98.2427 | 99.2701 | 97.2364 | 94.1737 | 1360 | 10 | 1337 | 38 | 1 | 2.6316 | |
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | homalt | 99.8833 | 100.0000 | 99.7669 | 92.9359 | 436 | 0 | 428 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | segdup | hetalt | 99.1597 | 100.0000 | 98.3333 | 95.5390 | 2 | 0 | 59 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.7015 | 100.0000 | 99.4048 | 74.4681 | 13 | 0 | 334 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 99.3243 | 100.0000 | 98.6577 | 87.6860 | 15 | 0 | 147 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.5789 | 99.5842 | 99.5736 | 56.7742 | 479 | 2 | 467 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.2658 | 99.8611 | 92.9204 | 71.7174 | 1438 | 2 | 1365 | 104 | 1 | 0.9615 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 94.4475 | 100.0000 | 89.4792 | 73.5318 | 914 | 0 | 859 | 101 | 1 | 0.9901 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 99.3243 | 100.0000 | 98.6577 | 87.6860 | 15 | 0 | 147 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.3289 | 100.0000 | 98.6667 | 70.3557 | 5 | 0 | 74 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8435 | 99.7712 | 99.9160 | 32.7499 | 1308 | 3 | 1190 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m1_e0 | hetalt | 99.3548 | 100.0000 | 98.7179 | 69.3517 | 41 | 0 | 154 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e0 | hetalt | 99.3865 | 100.0000 | 98.7805 | 70.8703 | 42 | 0 | 162 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e1 | hetalt | 99.4012 | 100.0000 | 98.8095 | 70.6294 | 43 | 0 | 166 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | homalt | 99.5466 | 99.4729 | 99.6203 | 81.0066 | 1321 | 7 | 1312 | 5 | 1 | 20.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | homalt | 99.2221 | 98.9637 | 99.4819 | 94.6493 | 191 | 2 | 192 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | segdup | hetalt | 98.8764 | 100.0000 | 97.7778 | 95.6438 | 7 | 0 | 44 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | func_cds | hetalt | 54.5455 | 60.0000 | 50.0000 | 50.0000 | 3 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 72.8203 | 57.4281 | 99.4845 | 34.4595 | 719 | 533 | 193 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.1148 | 70.0000 | 99.3007 | 50.8591 | 35 | 15 | 142 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 85.9670 | 76.8000 | 97.6190 | 25.0000 | 96 | 29 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | het | 95.7880 | 94.1234 | 97.5124 | 84.4692 | 961 | 60 | 980 | 25 | 1 | 4.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m1_e0 | hetalt | 75.2274 | 61.2903 | 97.3684 | 92.9630 | 76 | 48 | 37 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e0 | hetalt | 75.4805 | 61.6000 | 97.4359 | 93.3219 | 77 | 48 | 38 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | hetalt | 73.5849 | 59.0909 | 97.5000 | 93.2660 | 78 | 54 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | het | 95.6334 | 94.2690 | 97.0379 | 88.0521 | 806 | 49 | 819 | 25 | 1 | 4.0000 | |
| gduggal-bwafb | INDEL | * | tech_badpromoters | * | 95.9637 | 93.4211 | 98.6486 | 48.6111 | 71 | 5 | 73 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | tech_badpromoters | homalt | 98.5075 | 100.0000 | 97.0588 | 53.4247 | 33 | 0 | 33 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.2759 | 0 | 4 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 96.2963 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.2143 | 0 | 4 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 96.2963 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 63.1380 | 46.2604 | 99.4048 | 57.0332 | 167 | 194 | 167 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 68.8525 | 53.8462 | 95.4545 | 75.5556 | 21 | 18 | 21 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 85.1218 | 75.0000 | 98.4018 | 76.1827 | 432 | 144 | 431 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.3267 | 77.8234 | 99.4737 | 73.5744 | 379 | 108 | 378 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 76.2943 | 63.6364 | 95.2381 | 76.1364 | 21 | 12 | 20 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 82.1997 | 70.3008 | 98.9474 | 87.7261 | 187 | 79 | 188 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 79.3651 | 67.5676 | 96.1538 | 69.7674 | 25 | 12 | 25 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m1_e0 | * | 76.5957 | 62.7907 | 98.1818 | 93.8133 | 162 | 96 | 162 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m1_e0 | het | 80.0000 | 68.2540 | 96.6292 | 95.5366 | 86 | 40 | 86 | 3 | 1 | 33.3333 | |