PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31651-31700 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 73.6842 | 63.6364 | 87.5000 | 99.6924 | 7 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 99.5960 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 75.0000 | 60.8696 | 97.6744 | 74.5562 | 42 | 27 | 42 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 78.7591 | 65.2015 | 99.4350 | 82.5616 | 356 | 190 | 352 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 74.4454 | 59.6206 | 99.0826 | 87.0083 | 220 | 149 | 216 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 99.2754 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 95.4545 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 92.9480 | 87.0130 | 99.7519 | 36.5354 | 402 | 60 | 402 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 76.0000 | 98.2759 | 73.0233 | 57 | 18 | 57 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 53.8462 | 87.5000 | 93.7500 | 7 | 6 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m0_e0 | * | 75.1793 | 60.7184 | 98.6817 | 93.9453 | 524 | 339 | 524 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m0_e0 | het | 77.0340 | 63.2826 | 98.4211 | 94.5205 | 374 | 217 | 374 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 73.6842 | 59.5745 | 96.5517 | 96.3151 | 28 | 19 | 28 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | homalt | 78.8991 | 65.3716 | 99.4859 | 87.5000 | 387 | 205 | 387 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 74.3590 | 60.4167 | 96.6667 | 96.4200 | 29 | 19 | 29 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e0 | homalt | 79.4494 | 66.1211 | 99.5074 | 87.9739 | 404 | 207 | 404 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 73.1707 | 58.8235 | 96.7742 | 96.3869 | 30 | 21 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | homalt | 79.4574 | 66.1290 | 99.5146 | 88.0476 | 410 | 210 | 410 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m1_e0 | * | 77.0354 | 63.0515 | 98.9899 | 94.0592 | 686 | 402 | 686 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m1_e0 | het | 79.1426 | 66.1157 | 98.5626 | 94.6081 | 480 | 246 | 480 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e0 | * | 77.9841 | 64.3045 | 99.0566 | 94.2525 | 735 | 408 | 735 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e0 | het | 80.2795 | 67.6702 | 98.6641 | 94.7495 | 517 | 247 | 517 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e1 | * | 78.1152 | 64.4771 | 99.0704 | 94.2799 | 746 | 411 | 746 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e1 | het | 80.4615 | 67.9221 | 98.6792 | 94.7881 | 523 | 247 | 523 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m1_e0 | * | 72.3894 | 57.0432 | 99.0315 | 95.5984 | 409 | 308 | 409 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m1_e0 | het | 74.4186 | 59.7510 | 98.6301 | 96.0087 | 288 | 194 | 288 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | * | 73.8487 | 58.8467 | 99.1170 | 95.6820 | 449 | 314 | 449 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | het | 76.0766 | 61.8677 | 98.7578 | 96.0549 | 318 | 196 | 318 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | * | 73.9130 | 58.9974 | 98.9224 | 95.6603 | 459 | 319 | 459 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | het | 76.1457 | 62.0690 | 98.4802 | 96.0428 | 324 | 198 | 324 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_siren | hetalt | 75.9124 | 61.9048 | 98.1132 | 96.3423 | 52 | 32 | 52 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m0_e0 | * | 82.9787 | 75.0000 | 92.8571 | 92.6316 | 6 | 2 | 13 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m0_e0 | het | 63.1579 | 50.0000 | 85.7143 | 93.1373 | 2 | 2 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | func_cds | * | 98.2084 | 99.9669 | 96.5106 | 26.4105 | 18144 | 6 | 17950 | 649 | 1 | 0.1541 | |
| eyeh-varpipe | SNP | * | func_cds | het | 97.1259 | 99.9642 | 94.4444 | 28.6508 | 11157 | 4 | 11033 | 649 | 1 | 0.1541 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4824 | 99.4939 | 99.4709 | 56.5517 | 1376 | 7 | 1316 | 7 | 1 | 14.2857 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 99.1736 | 100.0000 | 98.3607 | 83.9895 | 2 | 0 | 60 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 51.4286 | 64.2857 | 42.8571 | 93.8442 | 27 | 15 | 21 | 28 | 1 | 3.5714 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 57.5581 | 73.3333 | 47.3684 | 85.4962 | 11 | 4 | 9 | 10 | 1 | 10.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 69.3324 | 81.3725 | 60.3960 | 94.5786 | 83 | 19 | 61 | 40 | 1 | 2.5000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 63.1579 | 100.0000 | 46.1538 | 96.7581 | 9 | 0 | 6 | 7 | 1 | 14.2857 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 33.3333 | 100.0000 | 20.0000 | 91.8033 | 2 | 0 | 1 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | SNP | * | map_l100_m1_e0 | hetalt | 99.6622 | 100.0000 | 99.3266 | 65.7044 | 41 | 0 | 295 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e0 | hetalt | 99.6753 | 100.0000 | 99.3528 | 67.7116 | 42 | 0 | 307 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e1 | hetalt | 99.6805 | 100.0000 | 99.3631 | 67.6289 | 43 | 0 | 312 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | * | segdup | hetalt | 99.3197 | 100.0000 | 98.6486 | 95.3371 | 7 | 0 | 73 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | HG002compoundhet | hetalt | 99.8980 | 99.8273 | 99.9687 | 18.5958 | 578 | 1 | 6398 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | ti | func_cds | * | 99.2850 | 99.9637 | 98.6154 | 24.7463 | 13782 | 5 | 13675 | 192 | 1 | 0.5208 | |
| eyeh-varpipe | SNP | ti | func_cds | het | 98.8564 | 99.9647 | 97.7724 | 26.7528 | 8501 | 3 | 8427 | 192 | 1 | 0.5208 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4679 | 99.4172 | 99.5187 | 47.0701 | 853 | 5 | 827 | 4 | 1 | 25.0000 | |