PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31601-31650 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I6_15 | func_cds | * | 88.6076 | 81.3953 | 97.2222 | 32.0755 | 35 | 8 | 35 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | func_cds | hetalt | 57.1429 | 50.0000 | 66.6667 | 62.5000 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m0_e0 | homalt | 87.5912 | 83.3333 | 92.3077 | 87.2549 | 5 | 1 | 12 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l250_m0_e0 | homalt | 98.9595 | 98.1651 | 99.7669 | 92.8560 | 428 | 8 | 428 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | HG002compoundhet | hetalt | 99.8259 | 99.7680 | 99.8839 | 24.0741 | 860 | 2 | 860 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 85.5670 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 76.0000 | 73.0769 | 79.1667 | 96.7480 | 19 | 7 | 19 | 5 | 1 | 20.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.8889 | 88.8889 | 88.8889 | 93.8776 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.5455 | 83.3333 | 76.0870 | 91.5905 | 35 | 7 | 35 | 11 | 1 | 9.0909 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 78.9474 | 83.3333 | 75.0000 | 90.5660 | 30 | 6 | 30 | 10 | 1 | 10.0000 | |
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | homalt | 98.4293 | 97.4093 | 99.4709 | 94.3430 | 188 | 5 | 188 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | func_cds | het | 91.1392 | 84.1121 | 99.4475 | 61.8143 | 180 | 34 | 180 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | func_cds | homalt | 95.3917 | 91.5929 | 99.5192 | 34.3849 | 207 | 19 | 207 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 70.5882 | 60.0000 | 85.7143 | 99.7433 | 12 | 8 | 12 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 50.0000 | 40.0000 | 66.6667 | 99.7432 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 98.8848 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 94.5946 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 79.8928 | 67.1171 | 98.6755 | 71.9852 | 149 | 73 | 149 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 55.5556 | 40.0000 | 90.9091 | 92.7869 | 20 | 30 | 20 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m1_e0 | hetalt | 64.1304 | 47.5806 | 98.3333 | 95.4853 | 59 | 65 | 59 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e0 | hetalt | 64.5161 | 48.0000 | 98.3607 | 95.7639 | 60 | 65 | 60 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e1 | hetalt | 63.5897 | 46.9697 | 98.4127 | 95.7461 | 62 | 70 | 62 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m1_e0 | * | 70.4293 | 54.5590 | 99.3197 | 95.9257 | 730 | 608 | 730 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m1_e0 | het | 73.6223 | 58.5965 | 99.0119 | 96.3513 | 501 | 354 | 501 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | * | 71.6038 | 55.9659 | 99.3695 | 96.1005 | 788 | 620 | 788 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | het | 74.9485 | 60.2649 | 99.0926 | 96.4657 | 546 | 360 | 546 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m2_e1 | * | 71.8972 | 56.3586 | 99.2656 | 96.0740 | 811 | 628 | 811 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | * | map_l150_m2_e1 | het | 75.1678 | 60.6061 | 98.9399 | 96.4527 | 560 | 364 | 560 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | * | map_siren | hetalt | 69.1293 | 53.0364 | 99.2424 | 95.1860 | 131 | 116 | 131 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | segdup | hetalt | 85.0838 | 74.6154 | 98.9691 | 96.9725 | 97 | 33 | 96 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002compoundhet | hetalt | 80.5942 | 67.5311 | 99.9233 | 34.2251 | 1302 | 626 | 1302 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | * | 76.1905 | 66.6667 | 88.8889 | 75.6757 | 8 | 4 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | het | 80.0000 | 75.0000 | 85.7143 | 76.6667 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 75.8730 | 62.2396 | 97.1545 | 85.6476 | 239 | 145 | 239 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 87.4660 | 79.0698 | 97.8571 | 75.1332 | 136 | 36 | 137 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 81.0596 | 68.9189 | 98.3923 | 80.6832 | 306 | 138 | 306 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.3409 | 90.0277 | 99.0881 | 61.2028 | 325 | 36 | 326 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.6089 | 86.4097 | 99.7664 | 61.6487 | 426 | 67 | 427 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 90.0617 | 82.2222 | 99.5536 | 68.6275 | 222 | 48 | 223 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 65.8537 | 49.2027 | 99.5392 | 51.5625 | 216 | 223 | 216 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.1220 | 60.6299 | 98.7179 | 63.3803 | 77 | 50 | 77 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 79.2661 | 65.8537 | 99.5392 | 53.0303 | 216 | 112 | 216 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 83.3333 | 71.7391 | 99.3976 | 70.7746 | 165 | 65 | 165 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | * | 63.5659 | 47.1264 | 97.6190 | 95.5603 | 41 | 46 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | het | 71.2329 | 56.5217 | 96.2963 | 96.3563 | 26 | 20 | 26 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e0 | * | 62.1212 | 45.5556 | 97.6190 | 95.9184 | 41 | 49 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e0 | het | 69.3333 | 54.1667 | 96.2963 | 96.6871 | 26 | 22 | 26 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | * | 60.9929 | 44.3299 | 97.7273 | 95.8015 | 43 | 54 | 43 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | het | 70.0000 | 54.9020 | 96.5517 | 96.4976 | 28 | 23 | 28 | 1 | 1 | 100.0000 | |