PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31551-31600 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 72.7273 | 61.5385 | 88.8889 | 95.1872 | 8 | 5 | 16 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 72.1519 | 60.0000 | 90.4762 | 95.0237 | 9 | 6 | 19 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 72.1519 | 60.0000 | 90.4762 | 95.1501 | 9 | 6 | 19 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m0_e0 | * | 95.1569 | 95.6522 | 94.6667 | 96.8867 | 44 | 2 | 71 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m0_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 97.5506 | 13 | 0 | 22 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m1_e0 | het | 96.8418 | 98.1982 | 95.5224 | 94.5946 | 109 | 2 | 128 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | het | 97.1032 | 98.3471 | 95.8904 | 94.6986 | 119 | 2 | 140 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e1 | het | 97.1098 | 98.3607 | 95.8904 | 94.8006 | 120 | 2 | 140 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | hetalt | 60.7686 | 44.2308 | 97.0588 | 96.6403 | 23 | 29 | 33 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 88.8889 | 100.0000 | 80.0000 | 95.3271 | 3 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 85.7143 | 100.0000 | 75.0000 | 96.0784 | 2 | 0 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m1_e0 | * | 92.1466 | 88.8889 | 95.6522 | 95.5684 | 16 | 2 | 22 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m1_e0 | homalt | 94.1176 | 100.0000 | 88.8889 | 95.9821 | 5 | 0 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | het | 96.7742 | 100.0000 | 93.7500 | 94.3662 | 14 | 0 | 15 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | homalt | 86.0215 | 83.3333 | 88.8889 | 96.3563 | 5 | 1 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e1 | het | 96.7742 | 100.0000 | 93.7500 | 94.4828 | 14 | 0 | 15 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e1 | homalt | 86.0215 | 83.3333 | 88.8889 | 96.4000 | 5 | 1 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 10.2564 | 5.5556 | 66.6667 | 80.0000 | 1 | 17 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 21.4286 | 12.5000 | 75.0000 | 50.0000 | 3 | 21 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 44.6809 | 30.0000 | 87.5000 | 57.8947 | 6 | 14 | 7 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 92.8571 | 0 | 27 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 90.0000 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | * | 51.3761 | 36.3636 | 87.5000 | 70.3704 | 4 | 7 | 7 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 50.0000 | 66.6667 | 76.9231 | 1 | 1 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 53.3333 | 40.0000 | 80.0000 | 75.0000 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 53.3333 | 40.0000 | 80.0000 | 78.2609 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 40.0000 | 80.0000 | 79.1667 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m0_e0 | * | 27.2727 | 16.6667 | 75.0000 | 81.8182 | 1 | 5 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 81.8182 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m1_e0 | * | 41.1429 | 26.6667 | 90.0000 | 72.2222 | 4 | 11 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 78.5714 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e0 | * | 41.1429 | 26.6667 | 90.0000 | 76.1905 | 4 | 11 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 81.2500 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e1 | * | 41.1429 | 26.6667 | 90.0000 | 76.7442 | 4 | 11 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 44.4444 | 33.3333 | 66.6667 | 82.3529 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m1_e0 | * | 41.0959 | 27.2727 | 83.3333 | 80.0000 | 3 | 8 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 84.6154 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | * | 41.3793 | 27.2727 | 85.7143 | 78.7879 | 3 | 8 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 80.0000 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | * | 41.3793 | 27.2727 | 85.7143 | 79.4118 | 3 | 8 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 44.4444 | 33.3333 | 66.6667 | 81.2500 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | homalt | 58.4071 | 42.8571 | 91.6667 | 75.0000 | 9 | 12 | 11 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | tech_badpromoters | * | 57.1429 | 50.0000 | 66.6667 | 40.0000 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | tech_badpromoters | het | 50.0000 | 50.0000 | 50.0000 | 33.3333 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | func_cds | het | 97.4503 | 98.3051 | 96.6102 | 34.4444 | 58 | 1 | 57 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | func_cds | homalt | 99.1798 | 99.1597 | 99.2000 | 23.7805 | 118 | 1 | 124 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 58.8235 | 50.0000 | 71.4286 | 69.5652 | 1 | 1 | 5 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 85.5305 | 77.7778 | 95.0000 | 91.5966 | 7 | 2 | 19 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | homalt | 98.0392 | 100.0000 | 96.1538 | 96.6013 | 9 | 0 | 25 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | homalt | 98.0930 | 97.7273 | 98.4615 | 95.3472 | 43 | 1 | 64 | 1 | 1 | 100.0000 | |