PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30701-30750 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | * | map_l250_m2_e1 | homalt | 97.8541 | 98.2759 | 97.4359 | 94.2927 | 114 | 2 | 114 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5163 | 97.1354 | 97.9003 | 84.4426 | 373 | 11 | 373 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.1925 | 89.2396 | 99.7275 | 37.7439 | 622 | 75 | 732 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.5563 | 93.4447 | 99.8823 | 33.2941 | 1511 | 106 | 1697 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.5281 | 93.3899 | 99.8846 | 35.7196 | 1540 | 109 | 1731 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 97.6378 | 97.6378 | 97.6378 | 50.0000 | 124 | 3 | 124 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.9619 | 96.5087 | 99.4595 | 77.8443 | 387 | 14 | 368 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 90.8046 | 90.8046 | 90.8046 | 92.7980 | 79 | 8 | 79 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 90.3904 | 93.4783 | 87.5000 | 94.1889 | 43 | 3 | 42 | 6 | 2 | 33.3333 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 90.6077 | 91.1111 | 90.1099 | 93.5046 | 82 | 8 | 82 | 9 | 2 | 22.2222 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 89.7079 | 93.7500 | 86.0000 | 94.7917 | 45 | 3 | 43 | 7 | 2 | 28.5714 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 90.1554 | 89.6907 | 90.6250 | 93.3194 | 87 | 10 | 87 | 9 | 2 | 22.2222 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 90.3067 | 94.1176 | 86.7925 | 94.6138 | 48 | 3 | 46 | 7 | 2 | 28.5714 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7626 | 99.5735 | 99.9524 | 54.0128 | 14707 | 63 | 14708 | 7 | 2 | 28.5714 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3112 | 98.7493 | 99.8796 | 50.2546 | 6632 | 84 | 6634 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 99.2405 | 99.4924 | 98.9899 | 55.7047 | 196 | 1 | 196 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.1507 | 90.6667 | 95.7746 | 60.9890 | 68 | 7 | 68 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 53.1250 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m0_e0 | * | 98.9018 | 99.0730 | 98.7313 | 82.4245 | 855 | 8 | 856 | 11 | 2 | 18.1818 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m1_e0 | het | 99.0096 | 99.0902 | 98.9292 | 80.5480 | 1198 | 11 | 1201 | 13 | 2 | 15.3846 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | het | 99.0064 | 99.0446 | 98.9683 | 81.1940 | 1244 | 12 | 1247 | 13 | 2 | 15.3846 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e1 | het | 99.0158 | 99.0536 | 98.9780 | 81.3490 | 1256 | 12 | 1259 | 13 | 2 | 15.3846 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m0_e0 | * | 98.5962 | 98.9919 | 98.2036 | 86.2287 | 491 | 5 | 492 | 9 | 2 | 22.2222 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m1_e0 | het | 98.6982 | 99.0358 | 98.3629 | 83.8617 | 719 | 7 | 721 | 12 | 2 | 16.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | het | 98.7626 | 99.0838 | 98.4436 | 84.5181 | 757 | 7 | 759 | 12 | 2 | 16.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | het | 98.7722 | 99.0909 | 98.4556 | 84.6291 | 763 | 7 | 765 | 12 | 2 | 16.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | het | 98.4563 | 98.9627 | 97.9550 | 86.5733 | 477 | 5 | 479 | 10 | 2 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | het | 98.5517 | 99.0272 | 98.0806 | 87.1263 | 509 | 5 | 511 | 10 | 2 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e1 | het | 98.4769 | 98.8506 | 98.1061 | 87.1814 | 516 | 6 | 518 | 10 | 2 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_siren | het | 99.3647 | 99.4730 | 99.2567 | 77.5211 | 2265 | 12 | 2270 | 17 | 2 | 11.7647 | |
| hfeng-pmm3 | INDEL | D6_15 | * | hetalt | 96.8203 | 93.8708 | 99.9612 | 33.0763 | 7673 | 501 | 7722 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.8514 | 86.7287 | 99.9044 | 30.7514 | 2052 | 314 | 2090 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7735 | 93.7833 | 99.9606 | 29.6505 | 7558 | 501 | 7606 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7735 | 93.7833 | 99.9606 | 29.6505 | 7558 | 501 | 7606 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.3153 | 96.9789 | 99.6891 | 57.4040 | 1605 | 50 | 1603 | 5 | 2 | 40.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3028 | 98.7861 | 99.8249 | 33.3463 | 1709 | 21 | 1710 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7814 | 98.0085 | 99.5665 | 42.6678 | 689 | 14 | 689 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2356 | 91.2621 | 97.4093 | 87.4594 | 188 | 18 | 188 | 5 | 2 | 40.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 91.8605 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.0122 | 94.5111 | 99.6491 | 66.8219 | 551 | 32 | 568 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.0452 | 94.5372 | 99.6899 | 70.9197 | 623 | 36 | 643 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.5706 | 83.9080 | 96.0526 | 84.2975 | 73 | 14 | 73 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 92.7273 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.9161 | 92.6686 | 99.3994 | 59.6852 | 316 | 25 | 331 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.6037 | 94.0559 | 99.2933 | 56.1920 | 269 | 17 | 281 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.6522 | 100.0000 | 91.6667 | 87.0968 | 22 | 0 | 22 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.0664 | 92.8947 | 99.4624 | 64.1618 | 353 | 27 | 370 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.0452 | 94.5372 | 99.6899 | 70.9197 | 623 | 36 | 643 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.1365 | 93.1900 | 99.2754 | 67.6056 | 260 | 19 | 274 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8314 | 95.7447 | 95.9184 | 79.5833 | 45 | 2 | 47 | 2 | 2 | 100.0000 | |