PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30651-30700 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | ti | map_l250_m0_e0 | homalt | 99.0847 | 99.3119 | 98.8584 | 92.1786 | 433 | 3 | 433 | 5 | 2 | 40.0000 | |
| hfeng-pmm1 | SNP | ti | map_l250_m1_e0 | homalt | 99.4712 | 99.5022 | 99.4403 | 86.8852 | 1599 | 8 | 1599 | 9 | 2 | 22.2222 | |
| hfeng-pmm1 | SNP | ti | map_l250_m2_e0 | homalt | 99.5141 | 99.5426 | 99.4857 | 87.7793 | 1741 | 8 | 1741 | 9 | 2 | 22.2222 | |
| hfeng-pmm1 | SNP | ti | map_l250_m2_e1 | homalt | 99.5205 | 99.5485 | 99.4924 | 87.8161 | 1764 | 8 | 1764 | 9 | 2 | 22.2222 | |
| hfeng-pmm1 | SNP | tv | HG002compoundhet | het | 94.3861 | 89.4072 | 99.9521 | 52.4903 | 4178 | 495 | 4176 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8339 | 99.7418 | 99.9261 | 75.6588 | 5409 | 14 | 5409 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8339 | 99.7418 | 99.9261 | 75.6588 | 5409 | 14 | 5409 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9275 | 99.9275 | 99.9275 | 37.0751 | 2756 | 2 | 2756 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m1_e0 | het | 98.1685 | 97.4818 | 98.8649 | 87.9315 | 1742 | 45 | 1742 | 20 | 2 | 10.0000 | |
| hfeng-pmm2 | INDEL | * | HG002compoundhet | hetalt | 96.9221 | 94.0429 | 99.9832 | 52.1234 | 23680 | 1500 | 23795 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5711 | 99.3100 | 99.8335 | 74.5893 | 3598 | 25 | 3598 | 6 | 2 | 33.3333 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9303 | 99.9535 | 99.9071 | 44.5246 | 2151 | 1 | 2151 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 87.3181 | 84.0000 | 90.9091 | 83.8235 | 42 | 8 | 40 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | * | map_l125_m0_e0 | het | 96.7218 | 97.7853 | 95.6811 | 90.4293 | 574 | 13 | 576 | 26 | 2 | 7.6923 | |
| hfeng-pmm2 | INDEL | * | map_l250_m0_e0 | * | 90.9091 | 96.1538 | 86.2069 | 97.6404 | 75 | 3 | 75 | 12 | 2 | 16.6667 | |
| hfeng-pmm2 | INDEL | * | map_l250_m1_e0 | het | 94.3590 | 96.8421 | 92.0000 | 96.2714 | 184 | 6 | 184 | 16 | 2 | 12.5000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m1_e0 | homalt | 98.1651 | 98.1651 | 98.1651 | 94.2144 | 107 | 2 | 107 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e0 | het | 94.6636 | 97.1429 | 92.3077 | 96.3848 | 204 | 6 | 204 | 17 | 2 | 11.7647 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e0 | homalt | 98.2609 | 98.2609 | 98.2609 | 94.7513 | 113 | 2 | 113 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e1 | het | 94.6882 | 97.1564 | 92.3423 | 96.4734 | 205 | 6 | 205 | 17 | 2 | 11.7647 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e1 | homalt | 98.2759 | 98.2759 | 98.2759 | 94.8444 | 114 | 2 | 114 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | SNP | * | tech_badpromoters | * | 98.7261 | 98.7261 | 98.7261 | 47.3154 | 155 | 2 | 155 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | SNP | * | tech_badpromoters | homalt | 98.7654 | 100.0000 | 97.5610 | 49.3827 | 80 | 0 | 80 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9505 | 99.9307 | 99.9703 | 51.1679 | 10095 | 7 | 10095 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8403 | 99.7607 | 99.9201 | 44.1798 | 6253 | 15 | 6253 | 5 | 2 | 40.0000 | |
| hfeng-pmm2 | SNP | ti | map_l250_m0_e0 | homalt | 99.0847 | 99.3119 | 98.8584 | 92.1786 | 433 | 3 | 433 | 5 | 2 | 40.0000 | |
| hfeng-pmm2 | SNP | ti | map_l250_m1_e0 | homalt | 99.5025 | 99.5644 | 99.4406 | 86.8749 | 1600 | 7 | 1600 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | SNP | ti | map_l250_m2_e0 | homalt | 99.5429 | 99.5998 | 99.4860 | 87.7706 | 1742 | 7 | 1742 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | SNP | ti | map_l250_m2_e1 | homalt | 99.5488 | 99.6050 | 99.4927 | 87.8092 | 1765 | 7 | 1765 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | SNP | tv | HG002compoundhet | het | 94.2146 | 89.2146 | 99.8084 | 51.8565 | 4169 | 504 | 4167 | 8 | 2 | 25.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2862 | 98.9399 | 99.6350 | 37.4196 | 7373 | 79 | 7370 | 27 | 2 | 7.4074 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9638 | 100.0000 | 99.9275 | 37.9915 | 2758 | 0 | 2758 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m1_e0 | het | 97.7031 | 97.5937 | 97.8127 | 89.8457 | 1744 | 43 | 1744 | 39 | 2 | 5.1282 | |
| hfeng-pmm3 | INDEL | * | HG002compoundhet | hetalt | 96.7848 | 93.7847 | 99.9831 | 50.6733 | 23615 | 1565 | 23731 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.6708 | 95.4660 | 99.9798 | 58.6016 | 14718 | 699 | 14835 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8145 | 99.8409 | 99.7880 | 71.0316 | 1883 | 3 | 1883 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.4426 | 95.0383 | 99.9718 | 29.9341 | 10554 | 551 | 10633 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.4355 | 95.0263 | 99.9701 | 33.2469 | 9954 | 521 | 10036 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7438 | 99.5435 | 99.9450 | 57.4906 | 16354 | 75 | 16352 | 9 | 2 | 22.2222 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9071 | 99.9071 | 99.9071 | 44.1764 | 2150 | 2 | 2150 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.5285 | 88.0000 | 91.1111 | 83.4559 | 44 | 6 | 41 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 49.4845 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | map_l100_m0_e0 | het | 98.1428 | 98.2370 | 98.0488 | 85.0974 | 1003 | 18 | 1005 | 20 | 2 | 10.0000 | |
| hfeng-pmm3 | INDEL | * | map_l125_m0_e0 | het | 97.7062 | 97.7853 | 97.6271 | 88.4968 | 574 | 13 | 576 | 14 | 2 | 14.2857 | |
| hfeng-pmm3 | INDEL | * | map_l250_m0_e0 | * | 93.2515 | 97.4359 | 89.4118 | 97.2159 | 76 | 2 | 76 | 9 | 2 | 22.2222 | |
| hfeng-pmm3 | INDEL | * | map_l250_m1_e0 | het | 95.5844 | 96.8421 | 94.3590 | 95.3527 | 184 | 6 | 184 | 11 | 2 | 18.1818 | |
| hfeng-pmm3 | INDEL | * | map_l250_m1_e0 | homalt | 97.7169 | 98.1651 | 97.2727 | 93.5748 | 107 | 2 | 107 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e0 | het | 96.0000 | 97.1429 | 94.8837 | 95.4908 | 204 | 6 | 204 | 11 | 2 | 18.1818 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e0 | homalt | 97.8355 | 98.2609 | 97.4138 | 94.1971 | 113 | 2 | 113 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e1 | het | 96.0187 | 97.1564 | 94.9074 | 95.5891 | 205 | 6 | 205 | 11 | 2 | 18.1818 | |