PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30551-30600 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m1_e0 | het | 97.3614 | 99.1701 | 95.6175 | 89.2020 | 478 | 4 | 480 | 22 | 2 | 9.0909 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e0 | het | 97.5224 | 99.2218 | 95.8801 | 89.6170 | 510 | 4 | 512 | 22 | 2 | 9.0909 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e1 | het | 97.4630 | 99.0421 | 95.9335 | 89.6756 | 517 | 5 | 519 | 22 | 2 | 9.0909 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1935 | 99.1935 | 99.1935 | 86.9679 | 246 | 2 | 246 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_siren | het | 98.9959 | 99.4291 | 98.5665 | 80.1620 | 2264 | 13 | 2269 | 33 | 2 | 6.0606 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.2379 | 87.4049 | 99.9050 | 31.0740 | 2068 | 298 | 2103 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.5075 | 97.3958 | 99.6448 | 66.8042 | 561 | 15 | 561 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3610 | 99.0730 | 99.6508 | 61.9238 | 855 | 8 | 856 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.8169 | 93.8695 | 99.9554 | 27.7467 | 6676 | 436 | 6718 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.8082 | 93.8528 | 99.9557 | 28.4115 | 6733 | 441 | 6775 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7647 | 99.7647 | 99.7647 | 48.5783 | 848 | 2 | 848 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.9637 | 99.4792 | 98.4536 | 42.7729 | 191 | 1 | 191 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | D6_15 | segdup | * | 96.5333 | 94.7644 | 98.3696 | 93.4752 | 181 | 10 | 181 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | D6_15 | segdup | homalt | 98.0392 | 100.0000 | 96.1538 | 91.9753 | 50 | 0 | 50 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | HG002compoundhet | het | 89.2228 | 87.2340 | 91.3043 | 94.7005 | 41 | 6 | 21 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.7656 | 91.2621 | 96.4103 | 87.8429 | 188 | 18 | 188 | 7 | 2 | 28.5714 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.5660 | 96.0000 | 85.7143 | 92.3706 | 24 | 1 | 24 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.7395 | 93.9966 | 99.6473 | 67.3951 | 548 | 35 | 565 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.8846 | 94.2337 | 99.6890 | 71.2433 | 621 | 38 | 641 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.3614 | 86.2069 | 94.9367 | 84.3874 | 75 | 12 | 75 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 92.9825 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.4401 | 91.7889 | 99.3939 | 60.5263 | 313 | 28 | 328 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 95.8559 | 92.6573 | 99.2832 | 57.2741 | 265 | 21 | 277 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.7829 | 92.3684 | 99.4595 | 64.7619 | 351 | 29 | 368 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.8846 | 94.2337 | 99.6890 | 71.2433 | 621 | 38 | 641 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.5574 | 92.1147 | 99.2674 | 68.0702 | 257 | 22 | 271 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8314 | 95.7447 | 95.9184 | 80.0813 | 45 | 2 | 47 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 80.0000 | 100.0000 | 66.6667 | 89.0909 | 4 | 0 | 4 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | * | hetalt | 97.2753 | 94.7119 | 99.9812 | 62.6532 | 10603 | 592 | 10662 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | HG002complexvar | hetalt | 98.0250 | 96.2341 | 99.8839 | 71.1509 | 1661 | 65 | 1720 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6231 | 99.4357 | 99.8113 | 69.4243 | 2643 | 15 | 2645 | 5 | 2 | 40.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8453 | 100.0000 | 99.6910 | 63.6738 | 968 | 0 | 968 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1148 | 98.6494 | 99.5846 | 73.9124 | 1680 | 23 | 1678 | 7 | 2 | 28.5714 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4393 | 99.6255 | 99.2537 | 63.8327 | 266 | 1 | 266 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m0_e0 | * | 98.0810 | 98.7097 | 97.4603 | 88.9124 | 306 | 4 | 307 | 8 | 2 | 25.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 84.0816 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.7982 | 98.9157 | 98.6811 | 85.9241 | 821 | 9 | 823 | 11 | 2 | 18.1818 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 81.8382 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.8360 | 98.9498 | 98.7224 | 87.0837 | 848 | 9 | 850 | 11 | 2 | 18.1818 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5620 | 100.0000 | 99.1279 | 83.2766 | 341 | 0 | 341 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e1 | * | 98.8533 | 98.9655 | 98.7414 | 87.2204 | 861 | 9 | 863 | 11 | 2 | 18.1818 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 83.5473 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m0_e0 | * | 98.0105 | 97.7273 | 98.2955 | 92.1499 | 172 | 4 | 173 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 87.5676 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m1_e0 | * | 98.4256 | 98.6166 | 98.2353 | 89.2541 | 499 | 7 | 501 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 85.6017 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e0 | * | 98.4649 | 98.6513 | 98.2792 | 90.3452 | 512 | 7 | 514 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 87.3449 | 201 | 0 | 201 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4994 | 98.6817 | 98.3178 | 90.3967 | 524 | 7 | 526 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2701 | 100.0000 | 98.5507 | 87.4545 | 204 | 0 | 204 | 3 | 2 | 66.6667 | |