PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30501-30550 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.9076 | 98.2249 | 99.6000 | 84.9034 | 498 | 9 | 498 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0354 | 98.5075 | 99.5690 | 83.8609 | 462 | 7 | 462 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.5984 | 99.3324 | 99.8658 | 78.7628 | 1488 | 10 | 1488 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6881 | 99.4907 | 99.8864 | 60.3693 | 1758 | 9 | 1758 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9357 | 99.9228 | 99.9485 | 59.3004 | 3884 | 3 | 3884 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9275 | 99.9275 | 99.9275 | 36.0093 | 2756 | 2 | 2756 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3650 | 99.8551 | 98.8796 | 40.1582 | 3445 | 5 | 3442 | 39 | 2 | 5.1282 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0481 | 99.9065 | 98.2044 | 43.3046 | 2136 | 2 | 2133 | 39 | 2 | 5.1282 | |
| jlack-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 90.9091 | 93.7500 | 88.2353 | 86.7188 | 15 | 1 | 15 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 84.2105 | 88.8889 | 80.0000 | 90.9910 | 8 | 1 | 8 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l125_m1_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 86.7257 | 28 | 2 | 28 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l125_m2_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 88.6364 | 28 | 2 | 28 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 93.3333 | 93.3333 | 93.3333 | 88.6364 | 28 | 2 | 28 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.7368 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 90.0000 | 90.0000 | 90.0000 | 89.5833 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 90.0000 | 90.0000 | 90.0000 | 91.0314 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 90.0000 | 90.0000 | 90.0000 | 91.0314 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 91.6509 | 92.0000 | 91.3043 | 82.6415 | 46 | 4 | 42 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | * | map_l125_m0_e0 | het | 97.6068 | 97.2743 | 97.9417 | 88.6222 | 571 | 16 | 571 | 12 | 2 | 16.6667 | |
| jli-custom | INDEL | * | map_l250_m0_e0 | * | 92.4051 | 93.5897 | 91.2500 | 97.4416 | 73 | 5 | 73 | 7 | 2 | 28.5714 | |
| jli-custom | INDEL | * | map_l250_m1_e0 | het | 95.8115 | 96.3158 | 95.3125 | 95.5556 | 183 | 7 | 183 | 9 | 2 | 22.2222 | |
| jli-custom | INDEL | * | map_l250_m1_e0 | homalt | 97.6959 | 97.2477 | 98.1481 | 94.2706 | 106 | 3 | 106 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | * | map_l250_m2_e0 | het | 96.2085 | 96.6667 | 95.7547 | 95.7137 | 203 | 7 | 203 | 9 | 2 | 22.2222 | |
| jli-custom | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 94.8158 | 112 | 3 | 112 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | * | map_l250_m2_e1 | het | 96.2264 | 96.6825 | 95.7746 | 95.8087 | 204 | 7 | 204 | 9 | 2 | 22.2222 | |
| jli-custom | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 94.9227 | 113 | 3 | 113 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.0938 | 96.0938 | 96.0938 | 84.8401 | 369 | 15 | 369 | 15 | 2 | 13.3333 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.4317 | 89.6700 | 99.7275 | 38.3193 | 625 | 72 | 732 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.6222 | 93.5683 | 99.8821 | 33.8144 | 1513 | 104 | 1695 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.5928 | 93.5112 | 99.8845 | 36.3837 | 1542 | 107 | 1729 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3492 | 99.5652 | 99.1342 | 68.2256 | 229 | 1 | 229 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.5174 | 95.0980 | 97.9798 | 60.8696 | 97 | 5 | 97 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.1348 | 89.1304 | 95.3488 | 63.8655 | 41 | 5 | 41 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.9848 | 98.9848 | 98.9848 | 56.8928 | 195 | 2 | 195 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.5946 | 93.3333 | 95.8904 | 61.3757 | 70 | 5 | 70 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 55.8824 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.4197 | 99.6124 | 99.2278 | 81.9638 | 257 | 1 | 257 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m1_e0 | het | 98.4026 | 99.1729 | 97.6442 | 83.5954 | 1199 | 10 | 1202 | 29 | 2 | 6.8966 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.5773 | 99.4932 | 99.6616 | 80.9170 | 589 | 3 | 589 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e0 | het | 98.4217 | 99.1242 | 97.7291 | 84.1426 | 1245 | 11 | 1248 | 29 | 2 | 6.8966 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5905 | 99.5090 | 99.6721 | 81.7529 | 608 | 3 | 608 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | het | 98.4365 | 99.1325 | 97.7502 | 84.2651 | 1257 | 11 | 1260 | 29 | 2 | 6.8966 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.5964 | 99.5161 | 99.6769 | 81.8369 | 617 | 3 | 617 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.9899 | 99.3243 | 98.6577 | 85.6868 | 147 | 1 | 147 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m1_e0 | het | 97.8277 | 99.0358 | 96.6488 | 86.8244 | 719 | 7 | 721 | 25 | 2 | 8.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.4269 | 99.4269 | 99.4269 | 83.7068 | 347 | 2 | 347 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e0 | het | 97.9343 | 99.0838 | 96.8112 | 87.3344 | 757 | 7 | 759 | 25 | 2 | 8.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.4505 | 99.4505 | 99.4505 | 84.6219 | 362 | 2 | 362 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | het | 97.9502 | 99.0909 | 96.8354 | 87.4264 | 763 | 7 | 765 | 25 | 2 | 8.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.4624 | 99.4624 | 99.4624 | 84.6217 | 370 | 2 | 370 | 2 | 2 | 100.0000 | |