PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30201-30250 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.9977 | 95.0226 | 99.0566 | 91.2215 | 210 | 11 | 210 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.6443 | 94.7368 | 98.6301 | 91.5704 | 144 | 8 | 144 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.3923 | 97.0109 | 99.8136 | 86.7219 | 1071 | 33 | 1071 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.8784 | 96.1111 | 99.7118 | 87.9785 | 692 | 28 | 692 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6158 | 99.2821 | 99.9518 | 44.5938 | 6223 | 45 | 6223 | 3 | 2 | 66.6667 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8864 | 99.8637 | 99.9091 | 41.9065 | 2198 | 3 | 2198 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | ti | map_l250_m0_e0 | homalt | 98.2578 | 97.0183 | 99.5294 | 90.9651 | 423 | 13 | 423 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | ti | segdup | het | 98.8338 | 97.9219 | 99.7628 | 90.8470 | 11780 | 250 | 11778 | 28 | 2 | 7.1429 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.2107 | 98.4898 | 99.9421 | 60.9841 | 6913 | 106 | 6910 | 4 | 2 | 50.0000 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8713 | 99.7942 | 99.9485 | 59.3783 | 3879 | 8 | 3879 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | tv | map_l250_m0_e0 | het | 92.7323 | 88.1119 | 97.8641 | 94.1324 | 504 | 68 | 504 | 11 | 2 | 18.1818 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.8761 | 98.7371 | 99.0155 | 76.7875 | 2111 | 27 | 2112 | 21 | 2 | 9.5238 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 87.6190 | 92.0000 | 83.6364 | 85.0949 | 46 | 4 | 46 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 93.3333 | 100.0000 | 87.5000 | 56.9231 | 47 | 0 | 49 | 7 | 2 | 28.5714 | |
| asubramanian-gatk | INDEL | * | map_l100_m0_e0 | homalt | 95.2090 | 91.7485 | 98.9407 | 86.3268 | 467 | 42 | 467 | 5 | 2 | 40.0000 | |
| asubramanian-gatk | INDEL | * | map_l125_m0_e0 | het | 89.6574 | 87.7342 | 91.6667 | 93.1495 | 515 | 72 | 517 | 47 | 2 | 4.2553 | |
| asubramanian-gatk | INDEL | * | map_l150_m0_e0 | het | 88.4846 | 88.8563 | 88.1159 | 94.8291 | 303 | 38 | 304 | 41 | 2 | 4.8781 | |
| asubramanian-gatk | INDEL | * | segdup | het | 98.2193 | 97.7490 | 98.6942 | 95.9225 | 1433 | 33 | 1436 | 19 | 2 | 10.5263 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.7479 | 96.0199 | 95.4774 | 88.9136 | 193 | 8 | 190 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.6957 | 98.6957 | 98.6957 | 72.7488 | 227 | 3 | 227 | 3 | 2 | 66.6667 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 67.8832 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 84.9211 | 86.9565 | 82.9787 | 96.4952 | 40 | 6 | 39 | 8 | 2 | 25.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.4646 | 87.5000 | 81.6327 | 96.8161 | 42 | 6 | 40 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 85.3739 | 88.2353 | 82.6923 | 96.6984 | 45 | 6 | 43 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | INDEL | D16_PLUS | segdup | * | 94.1176 | 96.5517 | 91.8033 | 96.8893 | 56 | 2 | 56 | 5 | 2 | 40.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | segdup | het | 93.3333 | 100.0000 | 87.5000 | 97.2640 | 37 | 0 | 35 | 5 | 2 | 40.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8342 | 98.4496 | 99.2218 | 63.6492 | 254 | 4 | 255 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.7380 | 98.9848 | 98.4925 | 60.4374 | 195 | 2 | 196 | 3 | 2 | 66.6667 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | * | 91.3934 | 89.9194 | 92.9167 | 91.3840 | 446 | 50 | 446 | 34 | 2 | 5.8824 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 90.0178 | 90.3114 | 89.7260 | 93.4821 | 261 | 28 | 262 | 30 | 2 | 6.6667 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 86.5497 | 86.5497 | 86.5497 | 96.4640 | 148 | 23 | 148 | 23 | 2 | 8.6957 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 83.8428 | 86.4865 | 81.3559 | 96.8108 | 96 | 15 | 96 | 22 | 2 | 9.0909 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 86.8852 | 86.4130 | 87.3626 | 96.6544 | 159 | 25 | 159 | 23 | 2 | 8.6957 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 84.6774 | 86.7769 | 82.6772 | 96.9287 | 105 | 16 | 105 | 22 | 2 | 9.0909 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 86.6485 | 85.9459 | 87.3626 | 96.7337 | 159 | 26 | 159 | 23 | 2 | 8.6957 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 84.3373 | 86.0656 | 82.6772 | 96.9962 | 105 | 17 | 105 | 22 | 2 | 9.0909 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.4781 | 92.7273 | 96.2963 | 63.5135 | 51 | 4 | 52 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3025 | 98.9571 | 99.6503 | 63.7669 | 854 | 9 | 855 | 3 | 2 | 66.6667 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.2314 | 98.7059 | 99.7625 | 51.4137 | 839 | 11 | 840 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m1_e0 | het | 91.9355 | 90.4762 | 93.4426 | 91.7344 | 114 | 12 | 114 | 8 | 2 | 25.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 91.8288 | 90.0763 | 93.6508 | 91.9796 | 118 | 13 | 118 | 8 | 2 | 25.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 92.0981 | 90.3704 | 93.8931 | 91.8176 | 122 | 13 | 123 | 8 | 2 | 25.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_siren | het | 94.1539 | 92.1429 | 96.2547 | 88.8191 | 258 | 22 | 257 | 10 | 2 | 20.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.6330 | 82.7586 | 97.7528 | 84.0215 | 72 | 15 | 87 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 93.7500 | 1 | 0 | 2 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5820 | 99.5816 | 99.5825 | 75.9054 | 476 | 2 | 477 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.5660 | 88.8889 | 92.3077 | 83.7500 | 24 | 3 | 24 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.6857 | 97.8861 | 99.4985 | 72.2979 | 1667 | 36 | 1984 | 10 | 2 | 20.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 87.1648 | 79.0219 | 97.1787 | 89.3631 | 614 | 163 | 620 | 18 | 2 | 11.1111 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m1_e0 | homalt | 96.4155 | 93.4363 | 99.5910 | 81.7265 | 484 | 34 | 487 | 2 | 2 | 100.0000 | |