PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30001-30050 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D1_5 | map_l125_m0_e0 | het | 95.4545 | 97.3913 | 93.5933 | 87.7139 | 336 | 9 | 336 | 23 | 2 | 8.6957 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.1098 | 96.8481 | 99.4048 | 82.6536 | 338 | 11 | 334 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.1888 | 96.9780 | 99.4302 | 83.5211 | 353 | 11 | 349 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.2283 | 97.0430 | 99.4429 | 83.5246 | 361 | 11 | 357 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 94.2515 | 97.0297 | 91.6279 | 90.6318 | 196 | 6 | 197 | 18 | 2 | 11.1111 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m1_e0 | homalt | 97.7738 | 96.4912 | 99.0909 | 85.2646 | 220 | 8 | 218 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.6904 | 96.2810 | 99.1416 | 86.1310 | 233 | 9 | 231 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e1 | homalt | 97.7471 | 96.3710 | 99.1632 | 86.0885 | 239 | 9 | 237 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4050 | 99.1319 | 99.6795 | 63.7841 | 571 | 5 | 622 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5595 | 100.0000 | 99.1228 | 50.4348 | 343 | 0 | 339 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.4624 | 100.0000 | 98.9305 | 81.6667 | 155 | 0 | 185 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6602 | 99.7743 | 99.5465 | 28.6408 | 442 | 1 | 439 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.2467 | 94.3662 | 98.2036 | 32.9317 | 134 | 8 | 164 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 94.3499 | 95.3125 | 93.4066 | 88.7237 | 61 | 3 | 85 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 94.8166 | 95.7746 | 93.8776 | 89.0503 | 68 | 3 | 92 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 94.8166 | 95.7746 | 93.8776 | 89.3013 | 68 | 3 | 92 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e1 | homalt | 93.1507 | 91.8919 | 94.4444 | 85.1852 | 34 | 3 | 34 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 94.6958 | 94.5205 | 94.8718 | 90.3822 | 69 | 4 | 74 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e0 | * | 95.2619 | 95.1220 | 95.4023 | 90.4185 | 78 | 4 | 83 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e1 | homalt | 93.1034 | 93.1034 | 93.1034 | 85.5721 | 27 | 2 | 27 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_siren | homalt | 96.5251 | 96.1538 | 96.8992 | 78.3557 | 125 | 5 | 125 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.5134 | 92.4528 | 98.7835 | 71.4781 | 98 | 8 | 406 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.3653 | 95.6250 | 99.1701 | 81.0311 | 153 | 7 | 478 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 80.0000 | 100.0000 | 66.6667 | 86.9565 | 4 | 0 | 4 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.2036 | 97.1649 | 99.2647 | 76.2791 | 377 | 11 | 405 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.4748 | 95.8333 | 99.1736 | 75.2556 | 161 | 7 | 360 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I16_PLUS | map_siren | * | 96.0947 | 97.6744 | 94.5652 | 91.4736 | 84 | 2 | 87 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_siren | homalt | 95.4545 | 100.0000 | 91.3043 | 92.0690 | 21 | 0 | 21 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.6059 | 75.0000 | 99.7054 | 26.4355 | 654 | 218 | 677 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7686 | 99.6532 | 99.8842 | 35.8231 | 1724 | 6 | 1725 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7748 | 100.0000 | 99.5506 | 34.7507 | 443 | 0 | 443 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m1_e0 | * | 96.3250 | 96.5116 | 96.1390 | 87.0110 | 249 | 9 | 249 | 10 | 2 | 20.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m1_e0 | het | 95.7529 | 98.4127 | 93.2331 | 89.8162 | 124 | 2 | 124 | 9 | 2 | 22.2222 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | * | 96.2121 | 96.2121 | 96.2121 | 87.5589 | 254 | 10 | 254 | 10 | 2 | 20.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | het | 95.5224 | 97.7099 | 93.4307 | 90.1722 | 128 | 3 | 128 | 9 | 2 | 22.2222 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e1 | * | 96.1749 | 96.0000 | 96.3504 | 87.4023 | 264 | 11 | 264 | 10 | 2 | 20.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e1 | het | 95.6522 | 97.7778 | 93.6170 | 90.0774 | 132 | 3 | 132 | 9 | 2 | 22.2222 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | * | 97.5395 | 97.4460 | 97.6331 | 85.2014 | 496 | 13 | 495 | 12 | 2 | 16.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | het | 97.3388 | 98.2143 | 96.4789 | 87.3553 | 275 | 5 | 274 | 10 | 2 | 20.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.5446 | 93.6893 | 97.4747 | 88.2562 | 193 | 13 | 193 | 5 | 2 | 40.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 92.6893 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.5572 | 93.6535 | 99.6466 | 65.5088 | 546 | 37 | 564 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.8850 | 94.2337 | 99.6899 | 70.3721 | 621 | 38 | 643 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.7711 | 88.5057 | 97.4684 | 84.9810 | 77 | 10 | 77 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 100.0000 | 33.3333 | 95.2381 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.9615 | 90.9091 | 99.3921 | 58.2487 | 310 | 31 | 327 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 95.0984 | 91.2587 | 99.2754 | 54.6053 | 261 | 25 | 274 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.2125 | 91.3158 | 99.4565 | 63.2368 | 347 | 33 | 366 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.8850 | 94.2337 | 99.6899 | 70.3721 | 621 | 38 | 643 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.3796 | 89.9642 | 99.2509 | 66.4573 | 251 | 28 | 265 | 2 | 2 | 100.0000 | |