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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
2901-2950 / 86044 show all
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.6374
95.8769
95.3990
63.4546
1741774917417840435
51.7857
qzeng-customSNPtimap_l125_m1_e0*
82.7982
71.8971
97.5960
82.1188
21091824420948516435
84.3023
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.5463
98.3740
98.7193
52.5147
3599759535921466435
93.3476
bgallagher-sentieonINDELI6_15**
97.2604
96.4589
98.0753
52.5522
2394487923949470434
92.3404
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
89.4795
84.4436
95.1541
60.5296
13576250113588692434
62.7168
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
89.4795
84.4436
95.1541
60.5296
13576250113588692434
62.7168
eyeh-varpipeINDELI1_5HG002complexvarhomalt
96.6684
96.6984
96.6384
45.8931
1300444412649440434
98.6364
rpoplin-dv42INDELD1_5*het
99.5696
99.7077
99.4320
57.4420
8731825687348499434
86.9739
jlack-gatkINDELI1_5*homalt
99.5330
99.8014
99.2660
55.8866
6030812060314446434
97.3094
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.2317
97.7700
98.6978
52.2722
3577681635699471434
92.1444
ckim-dragenINDELD6_15**
97.9198
97.6928
98.1478
56.3201
2549060225488481433
90.0208
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.2783
97.3461
80.7559
60.7530
27217742274786548433
6.6127
gduggal-snapplatINDELI6_15HG002compoundhethomalt
4.7937
25.8065
2.6423
56.0714
82313479433
90.3967
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.2427
99.4993
95.0863
76.1894
168908516913874433
49.5423
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.2427
99.4993
95.0863
76.1894
168908516913874433
49.5423
mlin-fermikitINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
79.2712
87.6596
72.3480
57.0624
12361741214464433
93.3190
qzeng-customINDELI6_15HG002compoundhethomalt
12.1241
90.3226
6.4982
46.3178
28336518433
83.5907
rpoplin-dv42SNP***
99.9587
99.9447
99.9728
19.0681
305293016893052766832433
52.0433
ciseli-customINDELD16_PLUSHG002complexvar*
48.6337
42.4224
56.9758
58.5526
697946682515432
83.8835
ciseli-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
62.9012
59.7110
66.4516
34.9559
10336971030520432
83.0769
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.0556
96.6386
97.4762
58.8481
1707759417071442432
97.7376
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.0556
96.6386
97.4762
58.8481
1707759417071442432
97.7376
ckim-dragenINDELI6_15HG002compoundhet*
93.2228
91.6135
94.8896
36.8488
80407368040433432
99.7691
ckim-vqsrINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.2046
97.6826
98.7322
52.3033
3574484835667458432
94.3231
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5824
98.9009
98.2659
73.3042
3014533529694524432
82.4427
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5824
98.9009
98.2659
73.3042
3014533529694524432
82.4427
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
97.8939
99.4854
96.3524
57.0732
146947615268578432
74.7405
ghariani-varprowlSNP**het
99.0974
99.8581
98.3482
28.2380
18709072659187129431430431
1.3713
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
26.0805
23.8095
28.8303
55.2030
175560175432431
99.7685
cchapple-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.6951
91.3730
96.1384
58.0455
920486912448500431
86.2000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.2868
95.8815
98.7340
45.9174
1401560239539507431
85.0099
ndellapenna-hhgaINDELI1_5**
99.2393
98.9360
99.5445
55.9242
1490611603149032682431
63.1965
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.2987
96.2828
98.3362
70.4045
29347113328902489430
87.9346
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.2987
96.2828
98.3362
70.4045
29347113328902489430
87.9346
ghariani-varprowlSNP*map_siren*
98.7774
99.3373
98.2237
61.6367
1452599691452632627430
16.3685
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
85.7747
91.3682
80.8266
73.3477
19901881897450430
95.5556
jpowers-varprowlINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
71.5827
62.3493
84.0263
65.9228
243114682425461430
93.2755
mlin-fermikitINDELI1_5HG002complexvarhet
96.6423
95.7777
97.5227
51.7717
1742176817282439429
97.7221
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.9839
95.1498
92.8462
56.1753
1092755710928842429
50.9501
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
72.8176
66.8723
79.9231
50.7780
18439131871470429
91.2766
ckim-dragenINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
97.8109
99.7103
95.9825
45.9159
103273010321432429
99.3056
gduggal-bwaplatINDEL*HG002compoundhethomalt
63.4446
78.5714
53.2020
84.3340
539147540475429
90.3158
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3306
96.7640
97.9038
49.8941
2153072021531461429
93.0586
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.2920
98.3891
98.1951
74.4975
2998949129542543428
78.8214
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.2920
98.3891
98.1951
74.4975
2998949129542543428
78.8214
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6574
99.7082
97.6284
65.7023
181135318113440428
97.2727
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6574
99.7082
97.6284
65.7023
181135318113440428
97.2727
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
95.5224
99.6844
91.6941
50.1544
4738154736429428
99.7669
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
93.3883
91.3830
95.4836
39.3587
86438159408445428
96.1798
asubramanian-gatkINDELI6_15**
96.7639
95.5082
98.0531
53.5929
23708111523721471428
90.8705