PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29401-29450 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.2060 | 99.0415 | 99.3711 | 52.8190 | 310 | 3 | 316 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0338 | 100.0000 | 98.0861 | 79.6693 | 208 | 0 | 205 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3235 | 99.4208 | 99.2263 | 79.9379 | 515 | 3 | 513 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3401 | 99.4350 | 99.2453 | 81.4685 | 528 | 3 | 526 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3504 | 99.4444 | 99.2565 | 81.6068 | 537 | 3 | 534 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_siren | homalt | 99.5850 | 99.5050 | 99.6653 | 76.7645 | 1206 | 6 | 1191 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.1777 | 91.1321 | 99.5992 | 56.5331 | 483 | 47 | 497 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.1262 | 97.3404 | 98.9247 | 61.8070 | 183 | 5 | 184 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.2881 | 95.0078 | 99.6805 | 52.4677 | 609 | 32 | 624 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.7849 | 99.1019 | 98.4699 | 79.4919 | 10704 | 97 | 10747 | 167 | 2 | 1.1976 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.3750 | 99.1428 | 97.6190 | 80.4477 | 6824 | 59 | 6847 | 167 | 2 | 1.1976 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.0496 | 99.4927 | 98.6105 | 40.0631 | 11375 | 58 | 11426 | 161 | 2 | 1.2422 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 90.3389 | 86.2745 | 94.8052 | 93.0880 | 88 | 14 | 73 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6541 | 99.6750 | 99.6331 | 31.4341 | 4601 | 15 | 4616 | 17 | 2 | 11.7647 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8903 | 99.8539 | 99.9268 | 27.7249 | 2734 | 4 | 2730 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | map_siren | hetalt | 98.7805 | 100.0000 | 97.5904 | 66.8000 | 81 | 0 | 81 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.3775 | 98.4684 | 96.3105 | 71.9263 | 1993 | 31 | 2010 | 77 | 2 | 2.5974 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 92.8571 | 100.0000 | 86.6667 | 87.0690 | 12 | 0 | 13 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 92.8571 | 100.0000 | 86.6667 | 87.0690 | 12 | 0 | 13 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 89.8442 | 86.3636 | 93.6170 | 94.7486 | 57 | 9 | 44 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | het | 96.5578 | 93.5647 | 99.7488 | 79.9395 | 2777 | 191 | 2780 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e0 | het | 96.8039 | 94.0074 | 99.7719 | 81.1683 | 3059 | 195 | 3062 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e1 | het | 96.8015 | 94.0285 | 99.7430 | 81.3425 | 3102 | 197 | 3105 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | SNP | ti | map_siren | hetalt | 98.2759 | 100.0000 | 96.6102 | 66.2857 | 57 | 0 | 57 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.2748 | 97.9551 | 96.6038 | 68.7500 | 1485 | 31 | 1536 | 54 | 2 | 3.7037 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.2536 | 97.6815 | 94.8669 | 70.7534 | 969 | 23 | 998 | 54 | 2 | 3.7037 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7967 | 99.6732 | 99.9204 | 57.8106 | 10064 | 33 | 10047 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.4211 | 99.0527 | 99.7923 | 61.9326 | 4810 | 46 | 4804 | 10 | 2 | 20.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.4316 | 99.1580 | 99.7066 | 64.6054 | 3062 | 26 | 3059 | 9 | 2 | 22.2222 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2906 | 99.5974 | 98.9856 | 37.6602 | 7422 | 30 | 7416 | 76 | 2 | 2.6316 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6037 | 99.7194 | 99.4884 | 35.8783 | 2132 | 6 | 2139 | 11 | 2 | 18.1818 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | homalt | 99.7918 | 99.7140 | 99.8697 | 63.2094 | 3835 | 11 | 3833 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m1_e0 | homalt | 99.8478 | 99.7466 | 99.9492 | 70.2200 | 3936 | 10 | 3937 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e0 | homalt | 99.8529 | 99.7551 | 99.9509 | 72.6094 | 4073 | 10 | 4074 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e1 | homalt | 99.8426 | 99.7339 | 99.9516 | 72.6103 | 4123 | 11 | 4127 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | het | 96.2660 | 93.0610 | 99.6997 | 76.8718 | 1663 | 124 | 1660 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | het | 96.4634 | 93.5052 | 99.6150 | 78.6168 | 1814 | 126 | 1811 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | het | 96.5098 | 93.5878 | 99.6202 | 78.7624 | 1839 | 126 | 1836 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | tv | map_siren | hetalt | 98.7805 | 100.0000 | 97.5904 | 66.8000 | 81 | 0 | 81 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.3468 | 95.0887 | 99.7147 | 63.4324 | 697 | 36 | 699 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.2259 | 98.5684 | 99.8923 | 66.7145 | 1859 | 27 | 1855 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.2954 | 98.8082 | 99.7875 | 49.1626 | 912 | 11 | 939 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | * | 97.1053 | 95.5214 | 98.7426 | 78.1490 | 1493 | 70 | 1492 | 19 | 2 | 10.5263 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | homalt | 98.5147 | 97.8389 | 99.2000 | 76.5368 | 498 | 11 | 496 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m1_e0 | het | 97.4629 | 96.2864 | 98.6685 | 76.9451 | 2152 | 83 | 2149 | 29 | 2 | 6.8966 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m1_e0 | homalt | 98.6835 | 97.7180 | 99.6683 | 77.1071 | 1199 | 28 | 1202 | 4 | 2 | 50.0000 | |