PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29201-29250 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.0436 | 94.8586 | 99.3316 | 83.4403 | 738 | 40 | 743 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.3980 | 99.5968 | 99.2000 | 86.4352 | 247 | 1 | 248 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | hetalt | 95.1069 | 92.8571 | 97.4684 | 93.1245 | 78 | 6 | 77 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | homalt | 99.7001 | 99.6575 | 99.7427 | 77.3460 | 1164 | 4 | 1163 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.2779 | 98.6498 | 99.9141 | 39.6579 | 2338 | 32 | 2326 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002complexvar | het | 91.1805 | 84.2105 | 99.4083 | 47.5155 | 560 | 105 | 504 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 79.5056 | 67.4419 | 96.8254 | 74.5968 | 58 | 28 | 61 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 67.7419 | 56.0000 | 85.7143 | 83.1325 | 14 | 11 | 12 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 73.8028 | 60.1852 | 95.3846 | 71.2389 | 65 | 43 | 62 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 84.9584 | 74.7191 | 98.4496 | 67.6692 | 133 | 45 | 127 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 76.7667 | 64.3678 | 95.0820 | 76.8939 | 56 | 31 | 58 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | * | 80.7947 | 70.9302 | 93.8462 | 71.6157 | 61 | 25 | 61 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | homalt | 78.9474 | 71.4286 | 88.2353 | 70.6897 | 15 | 6 | 15 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.0746 | 93.3535 | 96.8603 | 74.0318 | 618 | 44 | 617 | 20 | 2 | 10.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 7.1006 | 3.7267 | 75.0000 | 82.6087 | 6 | 155 | 6 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 9.8039 | 5.2083 | 83.3333 | 88.7850 | 10 | 182 | 10 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 55.0459 | 40.0000 | 88.2353 | 78.7500 | 14 | 21 | 15 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 76.3006 | 68.7500 | 85.7143 | 67.4419 | 11 | 5 | 12 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 97.5000 | 0 | 3 | 0 | 2 | 2 | 100.0000 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 75.0000 | 75.0000 | 75.0000 | 69.2308 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | * | 63.1579 | 54.5455 | 75.0000 | 78.3784 | 6 | 5 | 6 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 74.1935 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | * | 40.0000 | 33.3333 | 50.0000 | 85.7143 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | het | 57.1429 | 66.6667 | 50.0000 | 81.8182 | 2 | 1 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 84.0000 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 80.9524 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | tech_badpromoters | * | 28.5714 | 25.0000 | 33.3333 | 62.5000 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | tech_badpromoters | het | 40.0000 | 50.0000 | 33.3333 | 57.1429 | 1 | 1 | 1 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m0_e0 | homalt | 97.5610 | 96.1538 | 99.0099 | 73.5602 | 200 | 8 | 200 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.8261 | 96.3303 | 99.3691 | 77.2434 | 315 | 12 | 315 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m1_e0 | homalt | 97.6982 | 96.4646 | 98.9637 | 81.7408 | 191 | 7 | 191 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e0 | homalt | 97.7330 | 96.5174 | 98.9796 | 84.1808 | 194 | 7 | 194 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e1 | homalt | 97.7667 | 96.5686 | 98.9950 | 84.3553 | 197 | 7 | 197 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 75.6674 | 63.2653 | 94.1176 | 80.8989 | 31 | 18 | 32 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | het | 42.8571 | 33.3333 | 60.0000 | 96.2963 | 3 | 6 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m0_e0 | * | 46.1538 | 37.5000 | 60.0000 | 96.4029 | 3 | 5 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m0_e0 | het | 28.5714 | 25.0000 | 33.3333 | 97.3214 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m1_e0 | * | 50.0000 | 42.8571 | 60.0000 | 97.0414 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m1_e0 | het | 50.0000 | 50.0000 | 50.0000 | 97.1831 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e0 | * | 57.1429 | 50.0000 | 66.6667 | 96.8912 | 4 | 4 | 4 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e0 | het | 60.0000 | 60.0000 | 60.0000 | 96.9697 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e1 | * | 57.1429 | 50.0000 | 66.6667 | 97.0443 | 4 | 4 | 4 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e1 | het | 60.0000 | 60.0000 | 60.0000 | 97.1264 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | SNP | * | func_cds | het | 99.1057 | 99.2922 | 98.9199 | 32.1729 | 11082 | 79 | 11082 | 121 | 2 | 1.6529 | |
| jpowers-varprowl | SNP | * | map_l250_m0_e0 | homalt | 97.1660 | 95.3895 | 99.0099 | 94.2749 | 600 | 29 | 600 | 6 | 2 | 33.3333 | |
| jpowers-varprowl | SNP | * | tech_badpromoters | * | 95.3271 | 97.4522 | 93.2927 | 57.8406 | 153 | 4 | 153 | 11 | 2 | 18.1818 | |
| jpowers-varprowl | SNP | ti | func_cds | het | 99.3416 | 99.3650 | 99.3183 | 29.2650 | 8450 | 54 | 8450 | 58 | 2 | 3.4483 | |
| jpowers-varprowl | SNP | ti | map_l250_m0_e0 | homalt | 97.7830 | 96.1009 | 99.5249 | 93.5021 | 419 | 17 | 419 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | SNP | ti | segdup | het | 97.6001 | 98.8695 | 96.3629 | 92.1336 | 11894 | 136 | 11896 | 449 | 2 | 0.4454 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.1610 | 90.4762 | 73.5849 | 91.1519 | 38 | 4 | 39 | 14 | 2 | 14.2857 | |