PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28851-28900 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 71.8310 | 89.4737 | 60.0000 | 70.5882 | 17 | 2 | 3 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 71.9626 | 60.6299 | 88.5057 | 86.8976 | 77 | 50 | 77 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 71.8580 | 58.1818 | 93.9394 | 76.9231 | 32 | 23 | 31 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.6924 | 86.8805 | 99.3377 | 58.4022 | 298 | 45 | 300 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 89.1429 | 81.2500 | 98.7342 | 66.3830 | 156 | 36 | 156 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.9339 | 77.1098 | 99.6266 | 47.5519 | 1334 | 396 | 1334 | 5 | 2 | 40.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 91.7821 | 85.1027 | 99.5992 | 26.0741 | 497 | 87 | 497 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 38.9486 | 24.4745 | 95.3216 | 91.4756 | 163 | 503 | 163 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 38.9486 | 24.4745 | 95.3216 | 91.4756 | 163 | 503 | 163 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 51.1450 | 34.5361 | 98.5294 | 84.0936 | 134 | 254 | 134 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | map_siren | * | 46.9565 | 31.3953 | 93.1034 | 90.6149 | 27 | 59 | 27 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | map_siren | homalt | 56.2500 | 42.8571 | 81.8182 | 84.2857 | 9 | 12 | 9 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 87.8108 | 78.3843 | 99.8145 | 76.5550 | 1077 | 297 | 1076 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 77.6923 | 63.9241 | 99.0196 | 81.1460 | 202 | 114 | 202 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 63.8821 | 48.3271 | 94.2029 | 88.6792 | 130 | 139 | 130 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 68.0723 | 52.0737 | 98.2609 | 59.9303 | 113 | 104 | 113 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 68.7772 | 52.7619 | 98.7522 | 77.3150 | 554 | 496 | 554 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | * | 79.6064 | 66.4675 | 99.2196 | 91.7555 | 890 | 449 | 890 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | * | 79.7551 | 66.6667 | 99.2383 | 92.3930 | 912 | 456 | 912 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e1 | * | 80.0171 | 67.0251 | 99.2569 | 92.4026 | 935 | 460 | 935 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 75.5102 | 62.7119 | 94.8718 | 85.9206 | 37 | 22 | 37 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 78.7845 | 66.1017 | 97.4895 | 78.8121 | 234 | 120 | 233 | 6 | 2 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 62.9766 | 49.2569 | 87.2897 | 84.9168 | 464 | 478 | 467 | 68 | 2 | 2.9412 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 81.9605 | 70.3226 | 98.2143 | 87.3303 | 109 | 46 | 110 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 60.2985 | 43.5345 | 98.0583 | 86.3666 | 202 | 262 | 202 | 4 | 2 | 50.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 75.7488 | 61.1544 | 99.4924 | 57.4514 | 392 | 249 | 392 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 62.8931 | 46.2963 | 98.0392 | 83.4684 | 100 | 116 | 100 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | segdup | * | 90.0543 | 82.8571 | 98.6207 | 95.0257 | 145 | 30 | 143 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | * | HG002complexvar | hetalt | 90.9054 | 83.8710 | 99.2278 | 44.0605 | 260 | 50 | 257 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 63.5071 | 48.5507 | 91.7808 | 97.3961 | 134 | 142 | 134 | 12 | 2 | 16.6667 | |
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | homalt | 64.1655 | 47.2461 | 99.9635 | 77.1816 | 5490 | 6130 | 5484 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l125_m0_e0 | homalt | 54.9108 | 37.8576 | 99.9213 | 85.2772 | 2541 | 4171 | 2539 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | HG002complexvar | hetalt | 89.7041 | 82.1256 | 98.8235 | 43.1438 | 170 | 37 | 168 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l100_m0_e0 | homalt | 64.8122 | 47.9547 | 99.9463 | 76.1862 | 3728 | 4046 | 3722 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l125_m0_e0 | homalt | 55.1813 | 38.1207 | 99.8832 | 84.5557 | 1712 | 2779 | 1710 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m1_e0 | * | 54.0102 | 37.0605 | 99.5311 | 97.1343 | 1697 | 2882 | 1698 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m1_e0 | het | 57.3348 | 40.2965 | 99.3367 | 97.5609 | 1196 | 1772 | 1198 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m2_e0 | * | 56.1308 | 39.0775 | 99.5931 | 97.1311 | 1957 | 3051 | 1958 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m2_e0 | het | 59.6085 | 42.5630 | 99.4265 | 97.5359 | 1385 | 1869 | 1387 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m2_e1 | * | 56.1811 | 39.1253 | 99.5990 | 97.1464 | 1986 | 3090 | 1987 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m2_e1 | het | 59.7244 | 42.6796 | 99.4358 | 97.5469 | 1408 | 1891 | 1410 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | HG002complexvar | hetalt | 90.9054 | 83.8710 | 99.2278 | 44.0605 | 260 | 50 | 257 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.0404 | 76.1806 | 98.8320 | 80.6905 | 1097 | 343 | 1100 | 13 | 2 | 15.3846 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 85.5556 | 75.8206 | 98.1586 | 82.6237 | 693 | 221 | 693 | 13 | 2 | 15.3846 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 57.0248 | 41.8182 | 89.6104 | 97.1545 | 69 | 96 | 69 | 8 | 2 | 25.0000 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | homalt | 99.2528 | 98.6237 | 99.8899 | 77.4057 | 2723 | 38 | 2723 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | homalt | 98.9956 | 98.1332 | 99.8733 | 88.0983 | 1577 | 30 | 1577 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e0 | homalt | 99.0487 | 98.2276 | 99.8837 | 88.8268 | 1718 | 31 | 1718 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e1 | homalt | 99.0324 | 98.1941 | 99.8852 | 88.8818 | 1740 | 32 | 1740 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.9415 | 96.3753 | 99.5595 | 86.6901 | 452 | 17 | 452 | 2 | 2 | 100.0000 | |