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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
28601-28650 / 86044 show all
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
96.1286
95.3020
96.9697
78.0731
142712842
50.0000
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.4748
95.1598
99.9052
33.6375
2084106210722
100.0000
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.2777
94.8052
99.8826
40.8681
167992170122
100.0000
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.0861
98.4860
99.6935
62.3159
130120130142
50.0000
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5392
100.0000
99.0826
68.3599
216021622
100.0000
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4637
99.3248
99.6031
48.7496
4266294266172
11.7647
dgrover-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.9125
99.8688
97.9744
43.3648
1141815114152362
0.8475
dgrover-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9629
99.9555
99.9703
35.4085
67423674222
100.0000
dgrover-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.8051
99.9133
99.6971
35.6178
461244608142
14.2857
dgrover-gatkSNP*tech_badpromoters*
98.4026
98.0892
98.7179
49.6774
154315422
100.0000
dgrover-gatkSNP*tech_badpromotershomalt
98.1366
98.7500
97.5309
47.4026
7917922
100.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4249
99.3241
99.5259
48.4732
2939202939142
14.2857
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.9405
96.8326
99.0741
91.2409
214721422
100.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
98.0132
97.3684
98.6667
91.5636
148414822
100.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.9457
22001220022
100.0000
dgrover-gatkSNPtimap_l250_m1_e0homalt
99.0596
98.3199
99.8105
85.5645
158027158032
66.6667
dgrover-gatkSNPtimap_l250_m2_e0homalt
99.1074
98.3991
99.8260
86.5878
172128172132
66.6667
dgrover-gatkSNPtimap_l250_m2_e1homalt
99.1191
98.4199
99.8283
86.6233
174428174432
66.6667
dgrover-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.3391
99.1425
99.5364
69.3276
150313150372
28.5714
dgrover-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
99.0399
98.7903
99.2908
71.3498
9801298072
28.5714
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.5758
97.5758
97.5758
91.1812
161416142
50.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
97.1888
97.5806
96.8000
90.9157
121312142
50.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3897
38843388422
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.3783
27562275622
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.7972
99.8841
99.7104
37.7838
344643443102
20.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.7664
100.0000
99.5338
39.4410
213802135102
20.0000
dgrover-gatkSNPtvmap_l150_m0_e0homalt
99.2811
98.7952
99.7719
75.6572
131216131232
66.6667
dgrover-gatkSNPtvmap_l250_m0_e0het
96.5998
96.8531
96.3478
94.1784
55418554212
9.5238
dgrover-gatkSNPtvmap_l250_m0_e0homalt
98.1818
97.9275
98.4375
92.5983
189418932
66.6667
egarrison-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
84.4720
80.0000
89.4737
99.9555
1641722
100.0000
egarrison-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
93.3333
100.0000
87.5000
99.3504
1201422
100.0000
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
80.0000
71.2644
91.1765
99.9005
62256262
33.3333
egarrison-hhgaINDEL*map_l250_m1_e0het
95.5145
95.2632
95.7672
95.8815
181918182
25.0000
egarrison-hhgaINDEL*map_l250_m2_e0het
95.9427
95.7143
96.1722
95.9846
201920182
25.0000
egarrison-hhgaINDEL*map_l250_m2_e1het
95.9620
95.7346
96.1905
96.0667
202920282
25.0000
egarrison-hhgaINDELD16_PLUSHG002complexvarhetalt
59.4347
42.5101
98.7500
56.1644
10514215822
100.0000
egarrison-hhgaINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
57.3427
40.2628
99.5902
49.2196
52177348622
100.0000
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
51.9933
35.3075
98.5816
45.5598
15528413922
100.0000
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
74.7966
60.2857
98.5075
44.9315
21113919832
66.6667
egarrison-hhgaINDELD16_PLUSmap_l100_m0_e0*
82.4496
82.1429
82.7586
90.9375
2352452
40.0000
egarrison-hhgaINDELD16_PLUSmap_l100_m0_e0het
85.4749
89.4737
81.8182
90.4348
1721842
50.0000
egarrison-hhgaINDELD16_PLUSsegdup*
93.1619
93.1034
93.2203
92.7785
5445542
50.0000
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
80.5492
69.5652
95.6522
68.7075
48214422
100.0000
egarrison-hhgaINDELD1_5map_l125_m0_e0het
97.5398
97.6812
97.3988
87.9694
337833792
22.2222
egarrison-hhgaINDELD1_5map_l125_m1_e0homalt
99.2826
99.1404
99.4253
85.5781
346334622
100.0000
egarrison-hhgaINDELD1_5map_l125_m2_e0homalt
99.3122
99.1758
99.4490
86.4552
361336122
100.0000
egarrison-hhgaINDELD1_5map_l125_m2_e1homalt
99.1914
98.9247
99.4595
86.5160
368436822
100.0000
egarrison-hhgaINDELD1_5map_l150_m0_e0het
96.2963
96.5347
96.0591
91.1354
195719582
25.0000