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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
28451-28500 / 86044 show all
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
98.3899
96.9496
99.8736
43.2587
3941124395152
40.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
54.9020
40.0000
87.5000
88.3212
14211422
100.0000
ckim-isaacSNPtimap_l125_m0_e0het
75.4138
60.6559
99.6620
78.2483
501232515012172
11.7647
ckim-isaacSNPtimap_l125_m0_e0homalt
65.7804
49.0314
99.9093
59.9855
22022289220222
100.0000
ckim-isaacSNPtimap_l150_m0_e0homalt
64.3926
47.5190
99.8478
66.4710
13121449131222
100.0000
ckim-isaacSNPtimap_l150_m1_e0het
75.2265
60.4123
99.6666
78.7514
747348977473252
8.0000
ckim-isaacSNPtimap_l150_m2_e0het
75.7150
61.0434
99.6704
79.9741
786350187863262
7.6923
ckim-isaacSNPtimap_l250_m1_e0*
66.4534
49.9017
99.4343
90.2759
228522942285132
15.3846
ckim-isaacSNPtimap_l250_m1_e0homalt
61.8884
44.8662
99.7234
82.9922
72188672122
100.0000
ckim-isaacSNPtimap_l250_m2_e0homalt
62.2886
45.2830
99.7481
85.1339
79295779222
100.0000
ckim-isaacSNPtimap_l250_m2_e1homalt
62.4273
45.4289
99.7522
85.0970
80596780522
100.0000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
89.8495
82.0513
99.2857
77.1491
4169141732
66.6667
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
89.9538
82.0896
99.4845
75.5359
3858438622
100.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
97.8461
95.8323
99.9464
57.4072
3725162372722
100.0000
ckim-isaacSNPtvmap_l100_m1_e0homalt
68.8845
52.5489
99.9579
57.4205
47524291475222
100.0000
ckim-isaacSNPtvmap_l100_m2_e0homalt
69.2951
53.0280
99.9591
61.2002
48864328488622
100.0000
ckim-isaacSNPtvmap_l100_m2_e1homalt
69.3075
53.0424
99.9595
61.1858
49344368493422
100.0000
ckim-isaacSNPtvmap_l125_m1_e0homalt
62.9734
45.9727
99.9258
63.6902
26943166269422
100.0000
ckim-isaacSNPtvmap_l125_m2_e0homalt
63.4373
46.4683
99.9285
67.7501
27963221279622
100.0000
ckim-isaacSNPtvmap_l125_m2_e1homalt
63.5067
46.5426
99.9293
67.7423
28273247282722
100.0000
ckim-vqsrINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.6165
99.4259
99.8079
54.6157
363721363672
28.5714
ckim-vqsrINDEL*lowcmp_SimpleRepeat_triTR_51to200het
90.5425
92.0000
89.1304
86.2687
4644152
40.0000
ckim-vqsrINDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
97.9167
100.0000
95.9184
54.6296
4704722
100.0000
ckim-vqsrINDEL*map_l150_m0_e0*
95.5110
97.2763
93.8086
94.9219
50014500332
6.0606
ckim-vqsrINDEL*map_l150_m0_e0homalt
99.0881
99.3902
98.7879
91.7376
163116322
100.0000
ckim-vqsrINDEL*map_l150_m1_e0homalt
98.9154
98.7013
99.1304
89.0840
456645642
50.0000
ckim-vqsrINDEL*map_l150_m2_e0homalt
98.9583
98.7526
99.1649
89.9349
475647542
50.0000
ckim-vqsrINDEL*map_l250_m1_e0*
93.0757
94.7541
91.4557
97.2688
28916289272
7.4074
ckim-vqsrINDEL*map_l250_m2_e0*
93.4524
94.8640
92.0821
97.4260
31417314272
7.4074
ckim-vqsrINDEL*map_l250_m2_e1*
93.4911
94.8949
92.1283
97.4798
31617316272
7.4074
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
88.9417
80.9524
98.6807
38.3740
3748837452
40.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
80.7339
69.2913
96.7033
44.5122
88398832
66.6667
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
84.2857
75.1592
95.9350
54.2751
1183911852
40.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50het
78.7229
70.4918
89.1304
63.2000
43184152
40.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
75.3247
63.0435
93.5484
55.0725
29172922
100.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
80.7692
87.5000
75.0000
75.0000
71622
100.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
89.1445
83.7838
95.2381
81.2500
3164022
100.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
76.2995
61.9145
99.3921
30.0000
30418732722
100.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
54.0000
38.0282
93.1034
47.2727
27442722
100.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
72.7273
100.0000
57.1429
99.9868
10432
66.6667
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
72.7273
100.0000
57.1429
99.7676
10432
66.6667
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
91.8919
86.2944
98.2659
34.2205
1702717032
66.6667
ckim-isaacINDELD1_5map_l125_m1_e0hetalt
73.2558
69.2308
77.7778
95.6311
94722
100.0000
ckim-isaacINDELD1_5map_l125_m2_e0hetalt
72.7273
66.6667
80.0000
95.9514
105822
100.0000
ckim-isaacINDELD1_5map_l125_m2_e1hetalt
72.7273
66.6667
80.0000
96.0630
105822
100.0000
ckim-isaacINDELD1_5map_l150_m1_e0het
79.8048
67.2199
98.1873
91.0516
32415832562
33.3333
ckim-isaacINDELD1_5map_l150_m2_e0het
79.9092
67.3152
98.3003
91.4899
34616834762
33.3333
ckim-isaacINDELD1_5map_l150_m2_e1het
79.5911
66.8582
98.3146
91.5439
34917335062
33.3333
ckim-isaacINDELD1_5map_l250_m1_e0*
64.8438
48.5380
97.6471
96.7779
83888322
100.0000
ckim-isaacINDELD1_5map_l250_m1_e0het
70.1405
54.9550
96.9231
97.0865
61506322
100.0000