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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
2801-2850 / 86044 show all
anovak-vgINDELI1_5map_l100_m2_e0*
58.1587
59.3567
57.0081
84.8215
812556846638455
71.3166
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.2432
98.6409
90.2208
73.3792
11395157114401240455
36.6935
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.2432
98.6409
90.2208
73.3792
11395157114401240455
36.6935
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.4229
96.3710
98.4980
52.1860
30831116130755469455
97.0149
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
75.4613
91.1765
64.3669
39.3284
77575849470455
96.8085
asubramanian-gatkINDELI1_5**
99.0996
98.6108
99.5933
59.2515
1485712093148648607454
74.7941
hfeng-pmm3INDEL*HG002compoundhethomalt
74.6579
99.4169
59.7721
77.4506
6824682459454
98.9107
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
56.2787
41.6430
86.7771
58.5183
337147243406519454
87.4759
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
57.0872
46.0813
75.0000
33.7450
127014861368456454
99.5614
ltrigg-rtg1INDEL***
99.0160
98.3355
99.7061
56.0561
3388065735338554998454
45.4910
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.1130
95.4143
96.8220
50.6721
1410767814106463453
97.8402
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.0855
97.5186
98.6590
52.4830
3568490835608484451
93.1818
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.9489
97.2165
98.6923
51.4779
36847105536679486451
92.7984
eyeh-varpipeINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
56.5705
40.1699
95.6035
76.3129
6193922410155467451
96.5739
gduggal-snapfbSNP**homalt
99.6988
99.7992
99.5986
21.4529
1177792237011778604747451
9.5007
jlack-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.8272
98.5395
99.1166
73.0877
6349094163503566450
79.5053
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
60.4770
91.1661
45.2459
46.8023
25825414501450
89.8204
gduggal-bwafbINDELD16_PLUS**
85.9986
80.3656
92.4807
53.1498
545213325633458450
98.2533
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.1110
97.3601
98.8735
45.3846
3562696645291516450
87.2093
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
98.0746
98.4739
97.6786
54.4653
2497238725036595449
75.4622
ghariani-varprowlINDEL*map_siren*
90.8910
92.7126
89.1397
90.4253
68705406870837449
53.6440
qzeng-customSNPtimap_sirenhet
92.2591
86.5538
98.7696
67.2335
53994838853703669449
67.1151
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.1119
93.7088
90.5685
58.7145
18471245608584448
76.7123
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.1119
93.7088
90.5685
58.7145
18471245608584448
76.7123
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
81.8133
75.2350
89.6520
58.5736
376112383942455448
98.4615
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
81.8133
75.2350
89.6520
58.5736
376112383942455448
98.4615
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
80.8254
69.6160
96.3373
74.6865
21865954321857831448
53.9110
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
80.8254
69.6160
96.3373
74.6865
21865954321857831448
53.9110
gduggal-snapfbINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
56.0716
49.9257
63.9431
62.6651
2017202335061977448
22.6606
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_diTR_51to200*
39.2277
31.6516
51.5719
45.1410
6651436853801448
55.9301
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
29.6749
20.1610
56.1914
69.4731
6012380599467448
95.9315
ckim-dragenINDELI6_15**
97.2249
96.4630
97.9990
52.8733
2394587823949489448
91.6155
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9358
97.0774
98.8095
45.2536
3105793541417499447
89.5792
anovak-vgINDELI1_5map_l100_m1_e0*
58.0113
59.2233
56.8479
83.7016
793546826627447
71.2919
rpoplin-dv42INDELD6_15*het
97.5270
99.0079
96.0896
61.5469
1147711511451466447
95.9227
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
91.1545
88.4965
93.9771
38.2912
837010888301532447
84.0226
ckim-isaacSNPtiHG002complexvar*
96.1858
92.7592
99.8753
15.7158
47162236815471809589446
75.7216
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.3493
98.1589
98.5404
55.2323
3140358931326464446
96.1207
mlin-fermikitSNP*map_l250_m1_e0*
45.7291
31.7641
81.6080
76.7628
229449282294517446
86.2669
mlin-fermikitSNP*map_l250_m1_e0homalt
51.7475
41.7783
67.9657
72.7453
102914341029485445
91.7526
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
64.4166
93.0962
49.2457
68.6592
44533457471445
94.4798
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.1594
97.2539
97.0650
73.4982
2964383730823932445
47.7468
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.1594
97.2539
97.0650
73.4982
2964383730823932445
47.7468
anovak-vgINDEL*segduphomalt
76.7205
93.1250
65.2299
92.3073
89466908484445
91.9421
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
75.3026
95.6815
62.0803
56.2366
70932758463445
96.1123
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
92.5413
96.7290
88.7011
66.3212
35191193517448445
99.3304
gduggal-snapfbINDELI1_5*hetalt
80.2098
77.5793
83.0249
77.6167
868525104128844445
52.7251
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
44.8798
37.6755
55.4905
73.6943
4185692356854560444
9.7368
ckim-dragenSNP**het
99.7355
99.9519
99.5199
24.5349
187268690118730389035444
4.9142
eyeh-varpipeINDELI1_5HG002complexvarhet
97.2764
97.2566
97.2962
48.7706
1769049917129476444
93.2773