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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
28401-28450 / 86044 show all
ckim-vqsrINDELI6_15HG002compoundhethetalt
95.9547
92.2455
99.9747
28.2465
7875662791622
100.0000
ckim-vqsrINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.9845
98.4426
99.5324
77.7099
151724149072
28.5714
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.3114
97.6783
98.9529
73.0099
5891456762
33.3333
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.5441
97.3505
99.7673
61.8300
128635128632
66.6667
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5392
100.0000
99.0826
67.8940
216021622
100.0000
ckim-vqsrSNP**hetalt
97.4148
95.1780
99.7593
54.6645
8294282922
100.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2158
98.9203
99.5131
53.0673
2657292657132
15.3846
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7253
99.7898
99.6609
56.0602
6171136171212
9.5238
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6445
99.8219
99.4677
58.2805
392473924212
9.5238
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6927
99.4381
99.9487
76.0337
389322389322
100.0000
ckim-vqsrSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.0811
99.3345
98.8289
41.8039
18062121180592142
0.9346
ckim-vqsrSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.8227
99.5014
98.1531
44.9941
1137657113732142
0.9346
ckim-vqsrSNP*map_l100_m0_e0*
70.1414
54.3558
98.8482
87.4638
1785114990178502082
0.9615
ckim-vqsrSNP*map_l100_m0_e0het
80.5244
68.0594
98.5791
88.0545
144326773144312082
0.9615
ckim-vqsrSNP*map_l125_m1_e0homalt
45.7370
29.6539
99.9402
85.9137
501311892501332
66.6667
ckim-vqsrSNP*map_l125_m2_e0homalt
47.0112
30.7338
99.9439
86.8214
534012035534032
66.6667
ckim-vqsrSNP*map_l125_m2_e1homalt
47.2295
30.9206
99.9447
86.7543
542112111542132
66.6667
ckim-vqsrSNP*map_l150_m1_e0*
65.6433
49.1783
98.6821
91.1099
1505315556150502012
0.9950
ckim-vqsrSNP*map_l150_m2_e0het
78.1444
64.8041
98.4007
91.6936
130477086130442122
0.9434
ckim-vqsrSNP*map_l150_m2_e1het
78.2150
64.9020
98.3989
91.7124
132167147132132152
0.9302
ckim-vqsrSNP*tech_badpromoters*
98.4026
98.0892
98.7179
49.0196
154315422
100.0000
ckim-vqsrSNP*tech_badpromotershomalt
98.1366
98.7500
97.5309
47.0588
7917922
100.0000
ckim-vqsrSNPti*hetalt
97.3638
95.1890
99.6403
53.2773
5542855422
100.0000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2066
99.0169
99.3969
52.5864
1813181813112
18.1818
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7260
99.8005
99.6515
49.5605
400384003142
14.2857
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6469
99.8428
99.4518
52.6335
254042540142
14.2857
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.7064
96.3801
99.0698
91.1230
213821322
100.0000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
97.6744
96.7105
98.6577
91.3873
147514722
100.0000
ckim-vqsrSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.3604
98.8187
99.9081
42.3617
217526217522
100.0000
ckim-vqsrSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.4469
98.9759
99.9224
33.5509
386640386532
66.6667
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
84.9618
80.0000
90.5797
79.6460
12431125132
15.3846
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10het
82.9268
82.2581
83.6066
84.9383
511151102
20.0000
ckim-isaacINDELI6_15map_siren*
63.4176
46.8852
97.9592
84.2105
14316214432
66.6667
ckim-isaacSNP*func_cds*
99.4183
98.8760
99.9666
20.1352
179462041794662
33.3333
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
96.8086
94.8250
98.8768
51.0057
25471392553292
6.8966
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
96.5210
93.9856
99.1970
53.9957
23441502347192
10.5263
ckim-isaacSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
63.4921
48.7805
90.9091
88.2353
20212022
100.0000
ckim-isaacSNP*map_l125_m0_e0homalt
64.1166
47.1990
99.9369
61.5104
31683544316822
100.0000
ckim-isaacSNP*map_l150_m0_e0het
72.5569
57.0403
99.6699
83.7697
452934114529152
13.3333
ckim-isaacSNP*map_l150_m0_e0homalt
62.3254
45.2922
99.8921
68.1060
18522237185222
100.0000
ckim-isaacSNP*map_l250_m0_e0*
66.1457
49.5550
99.4361
93.9169
10581077105862
33.3333
ckim-isaacSNP*map_l250_m1_e0homalt
58.8606
41.7377
99.8058
83.7974
10281435102822
100.0000
ckim-isaacSNP*map_l250_m2_e0het
67.0153
50.5776
99.2819
92.1809
262725672627192
10.5263
ckim-isaacSNP*map_l250_m2_e0homalt
59.1933
42.0700
99.8233
85.8571
11301556113022
100.0000
ckim-isaacSNP*map_l250_m2_e1het
67.0943
50.6649
99.2926
92.2258
266725972667192
10.5263
ckim-isaacSNP*map_l250_m2_e1homalt
59.3225
42.2001
99.8259
85.8515
11471571114722
100.0000
ckim-isaacSNPtifunc_cds*
99.4788
98.9918
99.9707
19.0273
136481391364842
50.0000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
96.7262
94.6148
98.9340
44.5934
24071372413262
7.6923
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
96.3282
93.7975
98.9993
46.0791
1482981484152
13.3333
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
93.3541
87.9896
99.4152
75.0910
3374634022
100.0000