PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
28351-28400 / 86044 show all
ckim-vqsrINDELD1_5map_l150_m2_e1homalt
98.9899
98.7903
99.1903
88.6018
245324522
100.0000
ckim-vqsrINDELD1_5map_sirenhet
97.8636
97.4967
98.2332
85.9953
2220572224402
5.0000
ckim-vqsrINDELD1_5segdup*
99.1399
99.1840
99.0958
96.1257
109491096102
20.0000
ckim-vqsrINDELD1_5segduphomalt
99.7222
100.0000
99.4460
94.5493
359035922
100.0000
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
97.2332
96.8504
97.6190
80.0633
123412332
66.6667
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5517
99.4030
99.7009
66.4548
9996100032
66.6667
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5944
99.5365
99.6524
64.2502
859486032
66.6667
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
88.0242
78.7844
99.7191
26.2176
68718571022
100.0000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.6618
99.7743
99.5495
35.0877
442144222
100.0000
ckim-vqsrINDELD6_15map_l100_m1_e0*
96.1089
95.7364
96.4844
89.2797
2471124792
22.2222
ckim-vqsrINDELD6_15map_l100_m1_e0het
94.9416
96.8254
93.1298
92.1557
122412292
22.2222
ckim-vqsrINDELD6_15map_l100_m2_e0*
96.0000
95.4545
96.5517
89.8325
2521225292
22.2222
ckim-vqsrINDELD6_15map_l100_m2_e0het
94.7368
96.1832
93.3333
92.5456
126512692
22.2222
ckim-vqsrINDELD6_15map_l100_m2_e1*
95.9707
95.2727
96.6790
89.6919
2621326292
22.2222
ckim-vqsrINDELD6_15map_l100_m2_e1het
94.8905
96.2963
93.5252
92.4743
130513092
22.2222
ckim-vqsrINDELD6_15map_siren*
97.3325
96.8566
97.8131
86.8634
49316492112
18.1818
ckim-vqsrINDELD6_15map_sirenhet
96.9741
97.5000
96.4539
89.3222
2737272102
20.0000
ckim-vqsrINDELI16_PLUSHG002complexvarhetalt
96.6468
94.0299
99.4135
66.8932
3152033922
100.0000
ckim-vqsrINDELI16_PLUSHG002compoundhethetalt
95.7976
92.0210
99.8974
44.8061
1926167194822
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.9394
90.2913
97.8947
88.4988
1862018642
50.0000
ckim-vqsrINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.1538
100.0000
92.5926
92.7224
2502522
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.2821
93.1389
99.6448
63.2266
5434056122
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.3190
93.1715
99.6865
67.9236
6144563622
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.1212
87.3563
97.4359
84.8544
76117622
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
50.0000
100.0000
33.3333
95.0820
10122
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.9615
90.9091
99.3921
56.0160
3103132722
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.2891
91.6084
99.2780
52.0761
2622427522
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.9242
90.7895
99.4536
60.9392
3453536422
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.3190
93.1715
99.6865
67.9236
6144563622
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
94.9718
91.0394
99.2593
62.7586
2542526822
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
97.9112
96.6495
99.2063
75.8157
3751337532
66.6667
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4113
99.1196
99.7048
77.3525
135112135142
50.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7912
100.0000
99.5833
75.9880
478047822
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1236
92.5759
99.9541
23.6819
4302345435522
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.7868
93.8198
99.9475
22.1700
3780249380722
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0482
92.4350
99.9552
27.1689
4411361446422
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8968
100.0000
99.7938
64.2989
968096822
100.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.2060
267026722
100.0000
ckim-vqsrINDELI1_5map_l100_m0_e0*
97.3193
96.8692
97.7737
89.6605
52617527122
16.6667
ckim-vqsrINDELI1_5map_l100_m0_e0homalt
99.2840
100.0000
98.5782
81.2278
208020832
66.6667
ckim-vqsrINDELI1_5map_l125_m1_e0*
97.3838
96.3855
98.4029
90.0233
80030801132
15.3846
ckim-vqsrINDELI1_5map_l125_m2_e0*
97.4066
96.3827
98.4524
90.8257
82631827132
15.3846
ckim-vqsrINDELI1_5map_l125_m2_e1*
97.3861
96.3218
98.4742
90.8974
83832839132
15.3846
ckim-vqsrINDELI1_5map_l150_m1_e0*
96.6092
95.6522
97.5855
92.5754
48422485122
16.6667
ckim-vqsrINDELI1_5map_l150_m2_e0*
96.5943
95.5684
97.6424
93.2903
49623497122
16.6667
ckim-vqsrINDELI1_5map_l150_m2_e1*
96.5736
95.4802
97.6923
93.3153
50724508122
16.6667
ckim-vqsrINDELI1_5segdup*
99.0079
98.8669
99.1493
95.7156
104712104992
22.2222
ckim-vqsrINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.8593
471247122
100.0000