PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28201-28250 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 81.8182 | 90.0000 | 75.0000 | 99.2945 | 9 | 1 | 9 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 56.2500 | 81.8182 | 99.8908 | 9 | 7 | 9 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | * | tech_badpromoters | homalt | 97.0588 | 100.0000 | 94.2857 | 54.5455 | 33 | 0 | 33 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | * | hetalt | 79.5358 | 66.1148 | 99.7932 | 43.8033 | 1278 | 655 | 1448 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D16_PLUS | HG002complexvar | hetalt | 85.1780 | 74.4939 | 99.4398 | 52.4000 | 184 | 63 | 355 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 79.5102 | 66.0798 | 99.7928 | 43.7451 | 1276 | 655 | 1445 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 79.5102 | 66.0798 | 99.7928 | 43.7451 | 1276 | 655 | 1445 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 91.3043 | 91.3043 | 91.3043 | 88.3838 | 21 | 2 | 21 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 93.3333 | 93.3333 | 93.3333 | 72.5610 | 42 | 3 | 42 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 62.5000 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m0_e0 | * | 42.1053 | 66.6667 | 30.7692 | 92.3754 | 8 | 4 | 8 | 18 | 2 | 11.1111 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 26.6667 | 100.0000 | 15.3846 | 92.8177 | 2 | 0 | 2 | 11 | 2 | 18.1818 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m0_e0 | * | 40.0000 | 57.1429 | 30.7692 | 93.1937 | 4 | 3 | 4 | 9 | 2 | 22.2222 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 95.8763 | 0 | 0 | 0 | 4 | 2 | 50.0000 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m1_e0 | * | 59.4595 | 73.3333 | 50.0000 | 93.6047 | 11 | 4 | 11 | 11 | 2 | 18.1818 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 97.1751 | 0 | 0 | 0 | 5 | 2 | 40.0000 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e0 | * | 60.4651 | 76.4706 | 50.0000 | 94.0774 | 13 | 4 | 13 | 13 | 2 | 15.3846 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 96.9828 | 0 | 0 | 0 | 7 | 2 | 28.5714 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e1 | * | 59.0909 | 72.2222 | 50.0000 | 94.2094 | 13 | 5 | 13 | 13 | 2 | 15.3846 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 97.0213 | 0 | 0 | 0 | 7 | 2 | 28.5714 | ||
| mlin-fermikit | INDEL | D16_PLUS | segdup | homalt | 84.6154 | 91.6667 | 78.5714 | 97.0276 | 11 | 1 | 11 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 56.8303 | 39.7366 | 99.7333 | 37.6559 | 724 | 1098 | 748 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 81.8182 | 81.8182 | 81.8182 | 99.0886 | 9 | 2 | 9 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 99.1667 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 50.0000 | 100.0000 | 33.3333 | 99.9973 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 50.0000 | 100.0000 | 33.3333 | 99.9675 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 85.0062 | 74.2424 | 99.4203 | 29.8780 | 343 | 119 | 343 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | het | 61.6561 | 45.2174 | 96.8750 | 79.2746 | 156 | 189 | 155 | 5 | 2 | 40.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 97.3214 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 75.0000 | 100.0000 | 60.0000 | 96.2121 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.0100 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 96.6667 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 53.3333 | 44.4444 | 66.6667 | 99.0050 | 4 | 5 | 4 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 57.6052 | 40.6053 | 99.0909 | 37.5000 | 322 | 471 | 327 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 90.9091 | 95.2381 | 86.9565 | 50.0000 | 20 | 1 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | homalt | 50.0000 | 42.8571 | 60.0000 | 95.0495 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | * | 50.6787 | 38.8889 | 72.7273 | 93.4524 | 7 | 11 | 8 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.7447 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.8333 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | * | 88.2353 | 88.2353 | 88.2353 | 54.0541 | 15 | 2 | 15 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | homalt | 85.7143 | 100.0000 | 75.0000 | 57.8947 | 6 | 0 | 6 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | HG002complexvar | hetalt | 71.7549 | 56.4179 | 98.5437 | 70.9450 | 189 | 146 | 203 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 49.2700 | 33.7209 | 91.4286 | 84.0909 | 29 | 57 | 32 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.4177 | 92.0000 | 88.8889 | 91.0596 | 23 | 2 | 24 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 70.8184 | 55.4286 | 98.0392 | 71.1864 | 97 | 78 | 100 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 90.9091 | 93.7500 | 88.2353 | 76.0563 | 15 | 1 | 15 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 63.6364 | 53.8462 | 77.7778 | 71.8750 | 7 | 6 | 7 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | * | 57.1429 | 54.5455 | 60.0000 | 86.1111 | 6 | 5 | 6 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | het | 76.4706 | 72.2222 | 81.2500 | 86.5546 | 13 | 5 | 13 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e0 | het | 76.4706 | 72.2222 | 81.2500 | 88.6525 | 13 | 5 | 13 | 3 | 2 | 66.6667 | |