PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28101-28150 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7078 | 100.0000 | 99.4172 | 52.2803 | 858 | 0 | 853 | 5 | 2 | 40.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6888 | 99.5692 | 99.8086 | 46.3323 | 6241 | 27 | 6258 | 12 | 2 | 16.6667 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 88.5324 | 96.0396 | 82.1138 | 95.4326 | 97 | 4 | 101 | 22 | 2 | 9.0909 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.6341 | 95.4545 | 74.4186 | 96.0148 | 63 | 3 | 64 | 22 | 2 | 9.0909 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.5072 | 99.1591 | 99.8579 | 31.1980 | 1415 | 12 | 1405 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5765 | 99.1813 | 96.0227 | 68.9046 | 848 | 7 | 845 | 35 | 2 | 5.7143 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.3260 | 97.5610 | 95.1220 | 92.6391 | 40 | 1 | 39 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7709 | 99.7712 | 99.7706 | 38.2436 | 1308 | 3 | 1305 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | * | HG002compoundhet | hetalt | 95.3715 | 91.1597 | 99.9913 | 50.4712 | 22954 | 2226 | 23068 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.5440 | 84.4657 | 99.9171 | 36.7662 | 2300 | 423 | 2411 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.6217 | 88.0000 | 91.3043 | 82.5095 | 44 | 6 | 42 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m0_e0 | * | 96.6054 | 96.6926 | 96.5184 | 90.3545 | 497 | 17 | 499 | 18 | 2 | 11.1111 | |
| raldana-dualsentieon | INDEL | * | map_l150_m0_e0 | homalt | 97.8462 | 96.9512 | 98.7578 | 89.5182 | 159 | 5 | 159 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | het | 96.8336 | 96.3743 | 97.2973 | 87.9068 | 824 | 31 | 828 | 23 | 2 | 8.6957 | |
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | homalt | 98.1461 | 97.4026 | 98.9011 | 86.8269 | 450 | 12 | 450 | 5 | 2 | 40.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e0 | het | 96.9552 | 96.4680 | 97.4473 | 88.6581 | 874 | 32 | 878 | 23 | 2 | 8.6957 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e0 | homalt | 98.2199 | 97.5052 | 98.9451 | 88.0424 | 469 | 12 | 469 | 5 | 2 | 40.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e1 | het | 96.9025 | 96.3203 | 97.4918 | 88.7346 | 890 | 34 | 894 | 23 | 2 | 8.6957 | |
| raldana-dualsentieon | INDEL | * | map_l250_m1_e0 | * | 94.5813 | 94.4262 | 94.7368 | 94.7396 | 288 | 17 | 288 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | * | 95.0076 | 94.8640 | 95.1515 | 95.0798 | 314 | 17 | 314 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e1 | * | 95.0376 | 94.8949 | 95.1807 | 95.1912 | 316 | 17 | 316 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | * | segdup | het | 99.0763 | 98.7722 | 99.3823 | 94.1484 | 1448 | 18 | 1448 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 91.9908 | 86.2661 | 98.5294 | 74.4040 | 201 | 32 | 201 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 95.9184 | 100.0000 | 92.1569 | 39.2857 | 47 | 0 | 47 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m1_e0 | hetalt | 84.1295 | 75.8065 | 94.5055 | 88.4664 | 94 | 30 | 86 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | hetalt | 83.7547 | 75.2000 | 94.5055 | 89.4798 | 94 | 31 | 86 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e1 | hetalt | 83.8498 | 75.7576 | 93.8776 | 89.0990 | 100 | 32 | 92 | 6 | 2 | 33.3333 | |
| ndellapenna-hhga | INDEL | * | map_l125_m0_e0 | het | 96.9382 | 96.7632 | 97.1138 | 88.6556 | 568 | 19 | 572 | 17 | 2 | 11.7647 | |
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | het | 96.0441 | 95.6012 | 96.4912 | 91.7411 | 326 | 15 | 330 | 12 | 2 | 16.6667 | |
| ndellapenna-hhga | INDEL | * | map_l250_m1_e0 | het | 95.2632 | 95.2632 | 95.2632 | 95.6049 | 181 | 9 | 181 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | het | 95.7143 | 95.7143 | 95.7143 | 95.7282 | 201 | 9 | 201 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | het | 95.7346 | 95.7346 | 95.7346 | 95.8193 | 202 | 9 | 202 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | hetalt | 58.9170 | 42.1053 | 98.0769 | 57.6087 | 104 | 143 | 153 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 61.4859 | 44.5131 | 99.3789 | 49.1043 | 576 | 718 | 480 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 56.8714 | 40.0911 | 97.8102 | 43.3884 | 176 | 263 | 134 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 78.9474 | 68.1818 | 93.7500 | 97.4194 | 30 | 14 | 30 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | * | 93.1619 | 93.1034 | 93.2203 | 93.1949 | 54 | 4 | 55 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.5691 | 68.1159 | 95.6522 | 67.8322 | 47 | 22 | 44 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.8327 | 98.4496 | 99.2188 | 83.0013 | 254 | 4 | 254 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 76.4488 | 65.9574 | 90.9091 | 92.1053 | 31 | 16 | 30 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 75.5177 | 64.5833 | 90.9091 | 92.6829 | 31 | 17 | 30 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 77.1930 | 66.6667 | 91.6667 | 92.2414 | 34 | 17 | 33 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m0_e0 | het | 97.0930 | 96.8116 | 97.3761 | 87.2063 | 334 | 11 | 334 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.3051 | 97.9730 | 98.6395 | 86.5876 | 145 | 3 | 145 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | het | 96.0199 | 95.5446 | 96.5000 | 90.5794 | 193 | 9 | 193 | 7 | 2 | 28.5714 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.9011 | 98.6842 | 99.1189 | 87.0949 | 225 | 3 | 225 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9648 | 98.7603 | 99.1701 | 87.9077 | 239 | 3 | 239 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m1_e0 | * | 96.4497 | 95.3216 | 97.6048 | 94.7698 | 163 | 8 | 163 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m1_e0 | het | 95.4545 | 94.5946 | 96.3303 | 94.9373 | 105 | 6 | 105 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e0 | * | 96.7033 | 95.6522 | 97.7778 | 95.0685 | 176 | 8 | 176 | 4 | 2 | 50.0000 | |