PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27901-27950 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 97.1698 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 75.0000 | 100.0000 | 60.0000 | 96.4789 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.8679 | 98.4962 | 99.2424 | 81.2899 | 262 | 4 | 262 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.7013 | 98.9583 | 98.4456 | 43.0678 | 190 | 2 | 190 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002compoundhet | hetalt | 91.7314 | 84.8065 | 99.8878 | 40.3479 | 1775 | 318 | 1781 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 87.3595 | 78.0059 | 99.2620 | 52.7875 | 266 | 75 | 269 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 88.5924 | 80.0699 | 99.1453 | 49.0196 | 229 | 57 | 232 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 88.1439 | 79.2105 | 99.3485 | 55.5072 | 301 | 79 | 305 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 95.5556 | 95.5556 | 95.5556 | 77.2727 | 43 | 2 | 43 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | * | 91.4854 | 87.2093 | 96.2025 | 77.4929 | 75 | 11 | 76 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.9305 | 94.9367 | 99.0099 | 74.3003 | 300 | 16 | 300 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4769 | 97.1706 | 99.8188 | 42.1384 | 1099 | 32 | 1102 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0431 | 99.5192 | 98.5714 | 80.9264 | 207 | 1 | 207 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.4220 | 99.6139 | 99.2308 | 80.6620 | 516 | 2 | 516 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3415 | 99.4350 | 99.2481 | 82.1297 | 528 | 3 | 528 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | het | 98.1263 | 96.9136 | 99.3697 | 85.6928 | 471 | 15 | 473 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e0 | het | 98.0644 | 96.7807 | 99.3827 | 86.9285 | 481 | 16 | 483 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e1 | het | 98.1069 | 96.8504 | 99.3964 | 86.9861 | 492 | 16 | 494 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m1_e0 | * | 98.2131 | 97.6285 | 98.8048 | 88.8071 | 494 | 12 | 496 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e0 | * | 98.1594 | 97.4952 | 98.8327 | 89.9117 | 506 | 13 | 508 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | * | 98.2012 | 97.5518 | 98.8593 | 89.9733 | 518 | 13 | 520 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | * | 95.2830 | 95.2830 | 95.2830 | 95.7275 | 101 | 5 | 101 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | * | 95.5752 | 95.5752 | 95.5752 | 96.0900 | 108 | 5 | 108 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | * | 95.6140 | 95.6140 | 95.6140 | 96.1745 | 109 | 5 | 109 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.7062 | 96.6942 | 98.7395 | 67.2176 | 234 | 8 | 235 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.5410 | 97.5410 | 97.5410 | 68.6375 | 119 | 3 | 119 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.4444 | 79.1667 | 90.4762 | 80.0000 | 19 | 5 | 19 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m0_e0 | * | 81.3559 | 72.7273 | 92.3077 | 91.0653 | 24 | 9 | 24 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m0_e0 | het | 73.3333 | 64.7059 | 84.6154 | 91.5584 | 11 | 6 | 11 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m1_e0 | * | 93.1507 | 89.4737 | 97.1429 | 84.5133 | 102 | 12 | 102 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m1_e0 | het | 91.0714 | 86.4407 | 96.2264 | 85.3591 | 51 | 8 | 51 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | * | 93.2735 | 89.6552 | 97.1963 | 85.5014 | 104 | 12 | 104 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | het | 91.3793 | 86.8852 | 96.3636 | 85.8612 | 53 | 8 | 53 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e1 | * | 93.2735 | 89.6552 | 97.1963 | 85.8466 | 104 | 12 | 104 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e1 | het | 91.3793 | 86.8852 | 96.3636 | 86.1111 | 53 | 8 | 53 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m0_e0 | * | 69.2308 | 60.0000 | 81.8182 | 94.9309 | 9 | 6 | 9 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m0_e0 | het | 62.5000 | 55.5556 | 71.4286 | 93.9130 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m1_e0 | * | 88.0000 | 83.0189 | 93.6170 | 89.3905 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m1_e0 | het | 83.6364 | 76.6667 | 92.0000 | 89.6266 | 23 | 7 | 23 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e0 | * | 88.0000 | 83.0189 | 93.6170 | 90.5242 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e0 | het | 83.6364 | 76.6667 | 92.0000 | 90.6015 | 23 | 7 | 23 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e1 | * | 88.0000 | 83.0189 | 93.6170 | 90.8382 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e1 | het | 83.6364 | 76.6667 | 92.0000 | 90.8425 | 23 | 7 | 23 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m0_e0 | * | 57.1429 | 50.0000 | 66.6667 | 96.5909 | 4 | 4 | 4 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m0_e0 | het | 50.0000 | 50.0000 | 50.0000 | 95.8763 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m1_e0 | * | 82.6087 | 76.0000 | 90.4762 | 93.9828 | 19 | 6 | 19 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m1_e0 | het | 78.5714 | 73.3333 | 84.6154 | 93.4010 | 11 | 4 | 11 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e0 | * | 82.6087 | 76.0000 | 90.4762 | 94.6154 | 19 | 6 | 19 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e0 | het | 78.5714 | 73.3333 | 84.6154 | 93.9252 | 11 | 4 | 11 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e1 | * | 84.0000 | 77.7778 | 91.3043 | 94.3902 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |