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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
27751-27800 / 86044 show all
gduggal-snapplatINDELI6_15map_siren*
27.1540
17.0492
66.6667
90.7063
5225350252
8.0000
gduggal-snapplatINDELI6_15map_sirenhomalt
34.4828
22.2222
76.9231
89.1667
20702062
33.3333
gduggal-snapplatINDELI6_15segdup*
42.6472
30.2857
72.0588
94.2761
5312249192
10.5263
gduggal-snapplatSNP*map_l150_m0_e0hetalt
75.0000
100.0000
60.0000
94.1860
30322
100.0000
gduggal-snapplatSNP*map_l250_m0_e0homalt
86.7142
76.7886
99.5868
94.0431
48314648222
100.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7694
99.7050
99.8338
75.7174
540716540792
22.2222
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9221
99.8717
99.9725
60.1200
10897141089332
66.6667
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.9002
99.8433
99.9572
60.4236
700811700432
66.6667
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8009
99.9637
99.6386
38.4564
275712757102
20.0000
rpoplin-dv42SNPtvmap_l150_m0_e0hetalt
75.0000
100.0000
60.0000
94.1176
30322
100.0000
rpoplin-dv42SNPtvmap_l250_m0_e0homalt
96.2766
93.7824
98.9071
92.7981
1811218122
100.0000
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.3283
99.2191
99.4377
37.1644
18041142180381022
1.9608
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.3909
99.0035
99.7815
31.9351
4570464566102
20.0000
raldana-dualsentieonSNP*map_l125_m0_e0het
98.3431
98.4365
98.2499
76.1833
12466198124632222
0.9009
raldana-dualsentieonSNP*map_l150_m0_e0het
97.9798
98.0605
97.8994
80.7841
778615477831672
1.1976
raldana-dualsentieonSNP*map_l250_m0_e0homalt
98.7220
98.2512
99.1974
90.2732
6181161852
40.0000
raldana-dualsentieonSNP*tech_badpromoters*
98.0769
97.4522
98.7097
46.1806
153415322
100.0000
raldana-dualsentieonSNP*tech_badpromotershomalt
98.1366
98.7500
97.5309
46.0000
7917922
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_11to50het
97.5443
95.2668
99.9334
69.5454
2999149299922
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.8384
22001220022
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.5098
99.3105
99.7100
37.0828
106587410658312
6.4516
raldana-dualsentieonSNPtimap_l100_m0_e0het
98.6534
98.7699
98.5371
69.8191
13811172138082052
0.9756
raldana-dualsentieonSNPtimap_l150_m1_e0het
98.4666
98.6500
98.2839
76.4844
12203167121992132
0.9390
raldana-dualsentieonSNPtimap_l250_m1_e0het
97.3715
97.9784
96.7720
88.9838
2908602908972
2.0619
raldana-dualsentieonSNPtimap_l250_m2_e0het
97.5401
98.0947
96.9918
89.4930
3192623192992
2.0202
raldana-dualsentieonSNPtimap_l250_m2_e1het
97.5433
98.0903
97.0024
89.5913
32366332361002
2.0000
raldana-dualsentieonSNPtvHG002compoundhethomalt
99.8228
99.7344
99.9113
42.6999
33799338032
66.6667
raldana-dualsentieonSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.0221
96.4380
99.6592
65.6762
146254146252
40.0000
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9614
99.9743
99.9486
59.3220
38861388622
100.0000
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.4032
98.9855
99.8245
35.5338
341535341262
33.3333
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.1057
98.5033
99.7155
36.0522
210632210362
33.3333
raldana-dualsentieonSNPtvmap_l100_m0_e0homalt
99.7265
99.5580
99.8956
59.9142
382917382942
50.0000
raldana-dualsentieonSNPtvmap_l125_m0_e0homalt
99.6165
99.4147
99.8192
66.9456
220813220842
50.0000
raldana-dualsentieonSNPtvmap_l150_m0_e0*
98.6080
98.4427
98.7737
78.9854
4109654108512
3.9216
raldana-dualsentieonSNPtvmap_l150_m1_e0homalt
99.7335
99.5692
99.8983
67.6642
392917392942
50.0000
raldana-dualsentieonSNPtvmap_l150_m2_e0homalt
99.7424
99.5836
99.9017
70.2246
406617406642
50.0000
raldana-dualsentieonSNPtvmap_l150_m2_e1homalt
99.7335
99.5646
99.9029
70.1838
411618411642
50.0000
raldana-dualsentieonSNPtvmap_l250_m0_e0*
97.1091
96.6013
97.6222
91.9886
73926739182
11.1111
raldana-dualsentieonSNPtvmap_l250_m1_e0homalt
99.4740
99.4159
99.5322
84.0366
851585142
50.0000
raldana-dualsentieonSNPtvmap_l250_m2_e0homalt
99.4658
99.3597
99.5722
85.2640
931693142
50.0000
raldana-dualsentieonSNPtvmap_l250_m2_e1homalt
99.4709
99.3658
99.5763
85.3530
940694042
50.0000
raldana-dualsentieonSNPtvmap_sirenhet
99.3697
99.4827
99.2570
59.7589
28461148284562132
0.9390
rpoplin-dv42INDEL*func_cdshet
98.5959
98.1308
99.0654
47.2906
210421222
100.0000
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.4127
97.2715
99.5810
71.6772
7132071332
66.6667
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
84.8485
82.3529
87.5000
99.9550
1431422
100.0000
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
85.7143
90.0000
81.8182
99.3612
91922
100.0000
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
96.4815
93.9914
99.1071
75.0834
2191422222
100.0000
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.2269
98.6744
99.7855
71.4089
186125186142
50.0000
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
96.5368
94.6970
98.4496
79.6850
125712722
100.0000
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
90.9015
84.6774
98.1132
99.9441
1051910422
100.0000