PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27701-27750 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | * | func_cds | het | 99.3937 | 99.8746 | 98.9174 | 34.8349 | 11147 | 14 | 11147 | 122 | 2 | 1.6393 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.1609 | 80.9524 | 75.5556 | 97.2477 | 34 | 8 | 34 | 11 | 2 | 18.1818 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.9655 | 74.0741 | 64.5161 | 97.5180 | 20 | 7 | 20 | 11 | 2 | 18.1818 | |
| ghariani-varprowl | SNP | * | map_l250_m0_e0 | homalt | 97.0827 | 95.2305 | 99.0083 | 93.3038 | 599 | 30 | 599 | 6 | 2 | 33.3333 | |
| ghariani-varprowl | SNP | * | tech_badpromoters | * | 96.5732 | 98.7261 | 94.5122 | 54.3175 | 155 | 2 | 155 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | SNP | ti | func_cds | het | 99.5080 | 99.8942 | 99.1249 | 31.7349 | 8495 | 9 | 8495 | 75 | 2 | 2.6667 | |
| ghariani-varprowl | SNP | ti | map_l250_m0_e0 | homalt | 97.7830 | 96.1009 | 99.5249 | 92.4308 | 419 | 17 | 419 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | SNP | ti | segdup | het | 97.4023 | 99.5594 | 95.3366 | 92.6943 | 11977 | 53 | 11980 | 586 | 2 | 0.3413 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 63.7991 | 90.6900 | 49.2081 | 87.2696 | 828 | 85 | 870 | 898 | 2 | 0.2227 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 90.3835 | 96.3083 | 85.1454 | 76.8607 | 2974 | 114 | 3015 | 526 | 2 | 0.3802 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.3252 | 90.4762 | 72.2222 | 91.7808 | 38 | 4 | 39 | 15 | 2 | 13.3333 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 92.1569 | 6 | 0 | 6 | 6 | 2 | 33.3333 | |
| ghariani-varprowl | SNP | tv | map_l150_m0_e0 | homalt | 97.5460 | 95.7831 | 99.3750 | 80.3319 | 1272 | 56 | 1272 | 8 | 2 | 25.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.9045 | 95.9136 | 99.9799 | 60.6514 | 14787 | 630 | 14905 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1793 | 98.7333 | 99.6293 | 74.5125 | 2962 | 38 | 2956 | 11 | 2 | 18.1818 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7612 | 99.6819 | 99.8407 | 71.1771 | 1880 | 6 | 1880 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6600 | 95.4525 | 99.9719 | 30.6839 | 10600 | 505 | 10680 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.6959 | 95.5227 | 99.9703 | 33.3773 | 10006 | 469 | 10089 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9071 | 99.9071 | 99.9071 | 44.1619 | 2150 | 2 | 2150 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.5285 | 88.0000 | 91.1111 | 83.5165 | 44 | 6 | 41 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 50.5051 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m0_e0 | het | 97.2294 | 96.1802 | 98.3017 | 84.1086 | 982 | 39 | 984 | 17 | 2 | 11.7647 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 34.4828 | 23.2558 | 66.6667 | 81.2500 | 10 | 33 | 6 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 39.4737 | 27.2727 | 71.4286 | 84.6715 | 15 | 40 | 15 | 6 | 2 | 33.3333 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 42.7574 | 27.8075 | 92.4731 | 71.5596 | 104 | 270 | 86 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 36.6202 | 25.3766 | 65.7534 | 73.0876 | 219 | 644 | 192 | 100 | 2 | 2.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 34.0426 | 21.6216 | 80.0000 | 86.6667 | 8 | 29 | 8 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 22.9356 | 12.9887 | 97.9381 | 34.8993 | 103 | 690 | 95 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 11.1111 | 8.3333 | 16.6667 | 72.7273 | 2 | 22 | 1 | 5 | 2 | 40.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 71.0383 | 61.9048 | 83.3333 | 36.8421 | 13 | 8 | 10 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_siren | het | 45.1091 | 32.1429 | 75.6098 | 90.5093 | 90 | 190 | 62 | 20 | 2 | 10.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 58.9713 | 44.0476 | 89.1892 | 83.3333 | 37 | 47 | 33 | 4 | 2 | 50.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 50.2732 | 40.0000 | 67.6471 | 91.9622 | 24 | 36 | 23 | 11 | 2 | 18.1818 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 73.0270 | 60.6987 | 91.6395 | 81.0025 | 834 | 540 | 844 | 77 | 2 | 2.5974 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 42.3256 | 33.3333 | 57.9618 | 80.3504 | 89 | 178 | 91 | 66 | 2 | 3.0303 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m0_e0 | het | 82.1561 | 80.3681 | 84.0256 | 94.2956 | 262 | 64 | 263 | 50 | 2 | 4.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | * | 82.5979 | 77.6680 | 88.1960 | 95.0708 | 393 | 113 | 396 | 53 | 2 | 3.7736 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | * | 82.6518 | 77.8420 | 88.0952 | 95.5115 | 404 | 115 | 407 | 55 | 2 | 3.6364 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e1 | * | 82.8676 | 78.1544 | 88.1857 | 95.5224 | 415 | 116 | 418 | 56 | 2 | 3.5714 | |
| gduggal-snapplat | INDEL | I1_5 | segdup | homalt | 83.8070 | 77.3784 | 91.4005 | 94.4573 | 366 | 107 | 372 | 35 | 2 | 5.7143 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 52.2378 | 37.7049 | 85.0000 | 51.2195 | 23 | 38 | 17 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 24.4898 | 16.6667 | 46.1538 | 69.0476 | 6 | 30 | 6 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 49.8210 | 34.1176 | 92.3077 | 67.9012 | 29 | 56 | 24 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 29.8082 | 20.6612 | 53.4884 | 75.0000 | 50 | 192 | 46 | 40 | 2 | 5.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 29.5150 | 19.1176 | 64.7059 | 79.0123 | 13 | 55 | 11 | 6 | 2 | 33.3333 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 22.8155 | 12.9477 | 95.9184 | 63.1579 | 47 | 316 | 47 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 7.1429 | 4.1667 | 25.0000 | 86.6667 | 1 | 23 | 1 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 15.6250 | 9.0909 | 55.5556 | 80.8511 | 4 | 40 | 5 | 4 | 2 | 50.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 10.5305 | 5.9140 | 48.0000 | 69.1358 | 11 | 175 | 12 | 13 | 2 | 15.3846 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 13.4283 | 7.2848 | 85.7143 | 44.0000 | 11 | 140 | 12 | 2 | 2 | 100.0000 | |