PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27651-27700 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e1 | het | 35.0877 | 22.2222 | 83.3333 | 81.2500 | 2 | 7 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 6.7039 | 3.6585 | 40.0000 | 94.4444 | 3 | 79 | 2 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 75.0000 | 100.0000 | 60.0000 | 99.9892 | 1 | 0 | 6 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 60.0000 | 99.9881 | 0 | 0 | 6 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m0_e0 | homalt | 95.2577 | 92.3077 | 98.4026 | 77.2032 | 192 | 16 | 308 | 5 | 2 | 40.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | homalt | 95.2448 | 91.7431 | 99.0244 | 77.8618 | 300 | 27 | 406 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e0 | homalt | 94.9724 | 91.2023 | 99.0676 | 78.9189 | 311 | 30 | 425 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e1 | homalt | 95.0081 | 91.2536 | 99.0847 | 78.9803 | 313 | 30 | 433 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m1_e0 | homalt | 94.7873 | 91.4141 | 98.4190 | 82.4913 | 181 | 17 | 249 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m2_e0 | homalt | 94.8894 | 91.5423 | 98.4906 | 83.3960 | 184 | 17 | 261 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m2_e1 | homalt | 94.7029 | 91.1765 | 98.5130 | 83.5474 | 186 | 18 | 265 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | I6_15 | HG002compoundhet | homalt | 31.1688 | 19.3548 | 80.0000 | 52.3810 | 6 | 25 | 8 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 21.0383 | 11.9565 | 87.5000 | 38.4615 | 11 | 81 | 14 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 22.9299 | 13.2353 | 85.7143 | 26.3158 | 9 | 59 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_siren | homalt | 46.8227 | 31.1111 | 94.5946 | 68.9076 | 28 | 62 | 35 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | SNP | * | func_cds | homalt | 99.5466 | 99.1259 | 99.9709 | 21.8523 | 6918 | 61 | 6875 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 60.8696 | 51.2195 | 75.0000 | 96.2617 | 21 | 20 | 21 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | SNP | * | tech_badpromoters | * | 88.3476 | 84.7134 | 92.3077 | 52.4917 | 133 | 24 | 132 | 11 | 2 | 18.1818 | |
| gduggal-snapvard | SNP | * | tech_badpromoters | het | 86.4516 | 87.0130 | 85.8974 | 57.3770 | 67 | 10 | 67 | 11 | 2 | 18.1818 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.1995 | 98.5461 | 99.8616 | 38.6640 | 2169 | 32 | 2164 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 55.5669 | 45.7143 | 70.8333 | 96.2848 | 16 | 19 | 17 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5839 | 97.8372 | 99.3421 | 60.4167 | 769 | 17 | 755 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 55.0459 | 40.0000 | 88.2353 | 78.7500 | 14 | 21 | 15 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 76.3006 | 68.7500 | 85.7143 | 66.6667 | 11 | 5 | 12 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 98.3051 | 0 | 3 | 0 | 2 | 2 | 100.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 75.0000 | 75.0000 | 75.0000 | 70.3704 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | * | 72.7273 | 72.7273 | 72.7273 | 82.8125 | 8 | 3 | 8 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | het | 84.2105 | 100.0000 | 72.7273 | 81.0345 | 8 | 0 | 8 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 86.6667 | 3 | 3 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 84.6154 | 3 | 0 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | * | 44.4444 | 50.0000 | 40.0000 | 86.4865 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | het | 57.1429 | 100.0000 | 40.0000 | 84.8485 | 2 | 0 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | tech_badpromoters | * | 28.5714 | 25.0000 | 33.3333 | 70.0000 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | tech_badpromoters | het | 40.0000 | 50.0000 | 33.3333 | 66.6667 | 1 | 1 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.3233 | 60.7843 | 72.9730 | 93.0057 | 31 | 20 | 27 | 10 | 2 | 20.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m0_e0 | homalt | 97.0874 | 96.1538 | 98.0392 | 75.1523 | 200 | 8 | 200 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.5232 | 96.3303 | 98.7461 | 78.3582 | 315 | 12 | 315 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m1_e0 | homalt | 97.2010 | 96.4646 | 97.9487 | 82.7586 | 191 | 7 | 191 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e0 | homalt | 97.2431 | 96.5174 | 97.9798 | 85.0114 | 194 | 7 | 194 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e1 | homalt | 97.2840 | 96.5686 | 98.0100 | 85.1661 | 197 | 7 | 197 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 75.6674 | 63.2653 | 94.1176 | 81.0056 | 31 | 18 | 32 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m0_e0 | het | 50.0000 | 44.4444 | 57.1429 | 96.9957 | 4 | 5 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | * | 53.3333 | 50.0000 | 57.1429 | 96.8326 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | het | 44.4444 | 50.0000 | 40.0000 | 97.3958 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | * | 46.1538 | 42.8571 | 50.0000 | 97.7358 | 3 | 4 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | het | 44.4444 | 50.0000 | 40.0000 | 97.8541 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | * | 53.3333 | 50.0000 | 57.1429 | 97.7049 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | het | 54.5455 | 60.0000 | 50.0000 | 97.7941 | 3 | 2 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | * | 53.3333 | 50.0000 | 57.1429 | 97.7987 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | het | 54.5455 | 60.0000 | 50.0000 | 97.8873 | 3 | 2 | 3 | 3 | 2 | 66.6667 | |