PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27201-27250 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.5547 | 73.4026 | 99.7027 | 31.1263 | 919 | 333 | 1006 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.3008 | 97.1963 | 99.4307 | 73.6236 | 520 | 15 | 524 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.2454 | 92.7419 | 95.7983 | 99.9211 | 115 | 9 | 114 | 5 | 3 | 60.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7127 | 99.6993 | 99.7261 | 53.8549 | 3647 | 11 | 3641 | 10 | 3 | 30.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 55.7522 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l125_m0_e0 | het | 94.7671 | 95.7411 | 93.8127 | 91.0559 | 562 | 25 | 561 | 37 | 3 | 8.1081 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | homalt | 98.1651 | 98.1707 | 98.1595 | 90.6697 | 161 | 3 | 160 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | HG002compoundhet | * | 84.2105 | 100.0000 | 72.7273 | 75.0000 | 1 | 0 | 8 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | HG002compoundhet | hetalt | 84.2105 | 100.0000 | 72.7273 | 75.0000 | 1 | 0 | 8 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 1 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 62.5000 | 81.3953 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 81.3953 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 62.5000 | 78.3784 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 78.3784 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 62.5000 | 82.2222 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 82.2222 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 1 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.4079 | 91.7293 | 97.2477 | 87.7940 | 122 | 11 | 106 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9997 | 91.5094 | 96.6292 | 86.9883 | 97 | 9 | 86 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.1978 | 94.7154 | 97.7273 | 88.5833 | 233 | 13 | 215 | 5 | 3 | 60.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2182 | 92.7585 | 99.9459 | 61.2554 | 5508 | 430 | 5546 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.4085 | 99.1930 | 99.6249 | 78.2367 | 1352 | 11 | 1328 | 5 | 3 | 60.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0730 | 98.4951 | 99.6577 | 70.6945 | 2618 | 40 | 2620 | 9 | 3 | 33.3333 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1201 | 99.2954 | 98.9455 | 75.2393 | 1691 | 12 | 1689 | 18 | 3 | 16.6667 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0897 | 98.4762 | 99.7110 | 62.4593 | 1034 | 16 | 1035 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 97.3834 | 99.0792 | 95.7447 | 89.2325 | 538 | 5 | 540 | 24 | 3 | 12.5000 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 81.1556 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m1_e0 | * | 97.7394 | 98.7952 | 96.7059 | 89.6278 | 820 | 10 | 822 | 28 | 3 | 10.7143 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m2_e0 | * | 97.7534 | 98.8331 | 96.6970 | 90.4503 | 847 | 10 | 849 | 29 | 3 | 10.3448 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m2_e1 | * | 97.7866 | 98.8506 | 96.7452 | 90.5203 | 860 | 10 | 862 | 29 | 3 | 10.3448 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 96.8962 | 98.4190 | 95.4198 | 92.2035 | 498 | 8 | 500 | 24 | 3 | 12.5000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 96.9726 | 98.4586 | 95.5307 | 92.9472 | 511 | 8 | 513 | 24 | 3 | 12.5000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 97.0398 | 98.4934 | 95.6284 | 92.9688 | 523 | 8 | 525 | 24 | 3 | 12.5000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.6346 | 95.5466 | 97.7477 | 80.8621 | 236 | 11 | 217 | 5 | 3 | 60.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.7267 | 93.7500 | 99.8985 | 40.2385 | 2925 | 195 | 2954 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.4606 | 91.0112 | 98.1818 | 72.3618 | 162 | 16 | 162 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 69.5312 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.4149 | 94.6309 | 96.2121 | 77.5128 | 141 | 8 | 127 | 5 | 3 | 60.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7765 | 93.8813 | 99.8559 | 30.0168 | 2056 | 134 | 2079 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.9847 | 92.4337 | 99.8195 | 35.5314 | 1637 | 134 | 1659 | 3 | 3 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4172 | 99.3015 | 99.5333 | 49.8126 | 4265 | 30 | 4265 | 20 | 3 | 15.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2011 | 99.7140 | 98.6934 | 41.6778 | 18131 | 52 | 18128 | 240 | 3 | 1.2500 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8341 | 99.7463 | 97.9383 | 44.8790 | 11404 | 29 | 11401 | 240 | 3 | 1.2500 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6237 | 92.3077 | 97.0588 | 92.7312 | 132 | 11 | 132 | 4 | 3 | 75.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.0495 | 94.1176 | 96.0000 | 92.5540 | 96 | 6 | 96 | 4 | 3 | 75.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8159 | 99.9133 | 99.7187 | 39.4602 | 4612 | 4 | 4608 | 13 | 3 | 23.0769 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3913 | 99.3241 | 99.4585 | 49.1657 | 2939 | 20 | 2939 | 16 | 3 | 18.7500 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.8448 | 99.7726 | 99.9172 | 69.6417 | 4826 | 11 | 4826 | 4 | 3 | 75.0000 | |