PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26951-27000 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.3761 | 98.8412 | 99.9168 | 52.9178 | 27635 | 324 | 27634 | 23 | 3 | 13.0435 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.0802 | 98.5775 | 99.5880 | 67.8801 | 30700 | 443 | 30701 | 127 | 3 | 2.3622 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8700 | 99.7836 | 99.9566 | 69.9578 | 11527 | 25 | 11527 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0802 | 98.5775 | 99.5880 | 67.8801 | 30700 | 443 | 30701 | 127 | 3 | 2.3622 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8700 | 99.7836 | 99.9566 | 69.9578 | 11527 | 25 | 11527 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | ti | map_l250_m0_e0 | het | 97.6596 | 98.2869 | 97.0402 | 94.0240 | 918 | 16 | 918 | 28 | 3 | 10.7143 | |
| hfeng-pmm2 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9455 | 99.9208 | 99.9703 | 62.5348 | 10089 | 8 | 10089 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8432 | 99.7787 | 99.9077 | 76.2675 | 5411 | 12 | 5411 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.0808 | 91.0689 | 99.4624 | 87.4506 | 1295 | 127 | 1295 | 7 | 3 | 42.8571 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.5234 | 86.7470 | 99.1239 | 87.6564 | 792 | 121 | 792 | 7 | 3 | 42.8571 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.6879 | 92.0949 | 99.5726 | 86.9710 | 1165 | 100 | 1165 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.3244 | 88.0353 | 99.2898 | 87.3699 | 699 | 95 | 699 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.9622 | 96.2373 | 99.7500 | 82.0192 | 3990 | 156 | 3990 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.9120 | 94.3289 | 99.6406 | 81.3092 | 2495 | 150 | 2495 | 9 | 3 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8432 | 99.7787 | 99.9077 | 76.2675 | 5411 | 12 | 5411 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | het | 98.2477 | 98.6282 | 97.8701 | 83.2230 | 2804 | 39 | 2803 | 61 | 3 | 4.9180 | |
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | homalt | 99.5118 | 99.7741 | 99.2509 | 78.3981 | 1325 | 3 | 1325 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | homalt | 98.4615 | 99.4819 | 97.4619 | 93.6122 | 192 | 1 | 192 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e0 | het | 97.7583 | 97.7835 | 97.7331 | 90.3173 | 1897 | 43 | 1897 | 44 | 3 | 6.8182 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e1 | het | 97.7868 | 97.8117 | 97.7620 | 90.3675 | 1922 | 43 | 1922 | 44 | 3 | 6.8182 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4214 | 99.0232 | 99.8227 | 73.4004 | 5069 | 50 | 5067 | 9 | 3 | 33.3333 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.2342 | 85.6776 | 99.8774 | 37.7987 | 2333 | 390 | 2444 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | map_l125_m0_e0 | homalt | 98.7741 | 99.2958 | 98.2578 | 85.7498 | 282 | 2 | 282 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | * | map_l125_m1_e0 | het | 98.2769 | 98.1273 | 98.4270 | 85.5800 | 1310 | 25 | 1314 | 21 | 3 | 14.2857 | |
| hfeng-pmm3 | INDEL | * | map_l125_m1_e0 | homalt | 99.3179 | 99.4536 | 99.1826 | 83.3974 | 728 | 4 | 728 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e0 | het | 98.2731 | 98.0590 | 98.4881 | 86.4620 | 1364 | 27 | 1368 | 21 | 3 | 14.2857 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e0 | homalt | 99.2806 | 99.4758 | 99.0862 | 84.5627 | 759 | 4 | 759 | 7 | 3 | 42.8571 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e1 | het | 98.2939 | 98.0824 | 98.5064 | 86.5724 | 1381 | 27 | 1385 | 21 | 3 | 14.2857 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e1 | homalt | 99.2908 | 99.4832 | 99.0991 | 84.6836 | 770 | 4 | 770 | 7 | 3 | 42.8571 | |
| hfeng-pmm3 | INDEL | * | map_l150_m0_e0 | homalt | 98.4894 | 99.3902 | 97.6048 | 89.0921 | 163 | 1 | 163 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | het | 97.9024 | 98.0117 | 97.7933 | 88.3397 | 838 | 17 | 842 | 19 | 3 | 15.7895 | |
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | homalt | 98.9201 | 99.1342 | 98.7069 | 86.2069 | 458 | 4 | 458 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e0 | het | 97.9638 | 98.0132 | 97.9144 | 88.9709 | 888 | 18 | 892 | 19 | 3 | 15.7895 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e0 | homalt | 98.8577 | 98.9605 | 98.7552 | 87.5227 | 476 | 5 | 476 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e1 | het | 97.8929 | 97.8355 | 97.9504 | 89.0296 | 904 | 20 | 908 | 19 | 3 | 15.7895 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e1 | homalt | 98.8832 | 98.9837 | 98.7830 | 87.5316 | 487 | 5 | 487 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | segdup | * | 99.3329 | 99.0219 | 99.6459 | 93.8860 | 2531 | 25 | 2533 | 9 | 3 | 33.3333 | |
| hfeng-pmm3 | INDEL | * | segdup | homalt | 99.6878 | 99.7917 | 99.5842 | 93.0376 | 958 | 2 | 958 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | * | hetalt | 96.6173 | 93.5851 | 99.8525 | 38.5313 | 1809 | 124 | 2031 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | HG002complexvar | hetalt | 96.5594 | 93.9271 | 99.3435 | 47.5316 | 232 | 15 | 454 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | HG002compoundhet | homalt | 84.2105 | 100.0000 | 72.7273 | 76.0870 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.2919 | 89.4359 | 99.7056 | 40.6868 | 872 | 103 | 1016 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6136 | 93.5785 | 99.8523 | 38.4918 | 1807 | 124 | 2028 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.2592 | 98.0695 | 98.4496 | 57.0715 | 254 | 5 | 254 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3719 | 99.3026 | 99.4413 | 55.9656 | 712 | 5 | 712 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6136 | 93.5785 | 99.8523 | 38.4918 | 1807 | 124 | 2028 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6301 | 97.6017 | 99.6805 | 67.8425 | 936 | 23 | 936 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | homalt | 98.8577 | 98.9605 | 98.7552 | 88.0545 | 476 | 5 | 476 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e1 | homalt | 98.8832 | 98.9837 | 98.7830 | 88.0630 | 487 | 5 | 487 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | * | 95.6954 | 94.7541 | 96.6555 | 94.7800 | 289 | 16 | 289 | 10 | 3 | 30.0000 | |