PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26551-26600 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e0 | * | 65.5738 | 55.5556 | 80.0000 | 91.3420 | 15 | 12 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e0 | het | 70.8171 | 65.0000 | 77.7778 | 88.4615 | 13 | 7 | 14 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e1 | * | 64.1711 | 53.5714 | 80.0000 | 91.5612 | 15 | 13 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e1 | het | 70.8171 | 65.0000 | 77.7778 | 88.6792 | 13 | 7 | 14 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | segdup | het | 82.8571 | 78.3784 | 87.8788 | 91.3613 | 29 | 8 | 29 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 65.1163 | 63.6364 | 66.6667 | 99.3328 | 7 | 4 | 6 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 63.1579 | 60.0000 | 66.6667 | 99.3066 | 6 | 4 | 6 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 22.6415 | 15.3846 | 42.8571 | 75.0000 | 2 | 11 | 3 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m1_e0 | * | 77.7778 | 77.7778 | 77.7778 | 96.4000 | 14 | 4 | 14 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | * | 78.6127 | 77.2727 | 80.0000 | 96.3636 | 17 | 5 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | * | 78.6127 | 77.2727 | 80.0000 | 96.4413 | 17 | 5 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | segdup | homalt | 85.5227 | 82.0000 | 89.3617 | 91.4234 | 41 | 9 | 42 | 5 | 3 | 60.0000 | |
| anovak-vg | INDEL | D6_15 | tech_badpromoters | * | 62.0690 | 52.9412 | 75.0000 | 36.8421 | 9 | 8 | 9 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 18.5714 | 12.0370 | 40.6250 | 54.2857 | 13 | 95 | 13 | 19 | 3 | 15.7895 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 9.8728 | 5.6604 | 38.5965 | 58.6957 | 6 | 100 | 22 | 35 | 3 | 8.5714 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 30.6087 | 21.6216 | 52.3810 | 47.5000 | 8 | 29 | 11 | 10 | 3 | 30.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m1_e0 | * | 25.0000 | 18.1818 | 40.0000 | 78.2609 | 2 | 9 | 2 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 36.3636 | 33.3333 | 40.0000 | 72.2222 | 1 | 2 | 2 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e0 | * | 23.5294 | 18.1818 | 33.3333 | 81.8182 | 2 | 9 | 2 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 33.3333 | 33.3333 | 33.3333 | 76.0000 | 1 | 2 | 2 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e1 | * | 23.5294 | 18.1818 | 33.3333 | 81.8182 | 2 | 9 | 2 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 33.3333 | 33.3333 | 33.3333 | 76.0000 | 1 | 2 | 2 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I1_5 | func_cds | het | 53.0612 | 44.0678 | 66.6667 | 45.0704 | 26 | 33 | 26 | 13 | 3 | 23.0769 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 25.0000 | 66.6667 | 0 | 0 | 1 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m0_e0 | het | 45.5285 | 46.6667 | 44.4444 | 98.7198 | 7 | 8 | 8 | 10 | 3 | 30.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m1_e0 | het | 47.9644 | 43.3333 | 53.7037 | 97.5785 | 26 | 34 | 29 | 25 | 3 | 12.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m2_e0 | het | 50.5360 | 45.4545 | 56.8966 | 97.6697 | 30 | 36 | 33 | 25 | 3 | 12.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m2_e1 | het | 50.5360 | 45.4545 | 56.8966 | 97.7255 | 30 | 36 | 33 | 25 | 3 | 12.0000 | |
| anovak-vg | INDEL | I1_5 | tech_badpromoters | * | 63.6735 | 54.5455 | 76.4706 | 51.4286 | 12 | 10 | 13 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I6_15 | func_cds | het | 56.0784 | 45.8333 | 72.2222 | 40.0000 | 11 | 13 | 13 | 5 | 3 | 60.0000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m0_e0 | * | 63.1579 | 60.0000 | 66.6667 | 88.4615 | 9 | 6 | 16 | 8 | 3 | 37.5000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e1 | * | 60.6316 | 59.2593 | 62.0690 | 91.8310 | 16 | 11 | 18 | 11 | 3 | 27.2727 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 62.2222 | 66.6667 | 58.3333 | 94.7368 | 6 | 3 | 7 | 5 | 3 | 60.0000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 76.9231 | 75.0000 | 78.9474 | 96.1538 | 12 | 4 | 15 | 4 | 3 | 75.0000 | |
| anovak-vg | SNP | ti | map_l250_m0_e0 | homalt | 82.3486 | 70.6422 | 98.7055 | 93.2724 | 308 | 128 | 305 | 4 | 3 | 75.0000 | |
| anovak-vg | SNP | ti | tech_badpromoters | * | 89.2841 | 83.5294 | 95.8904 | 38.1356 | 71 | 14 | 70 | 3 | 3 | 100.0000 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.4648 | 98.0952 | 98.8372 | 65.8730 | 515 | 10 | 510 | 6 | 3 | 50.0000 | |
| anovak-vg | SNP | tv | map_l250_m0_e0 | homalt | 79.5181 | 67.3575 | 97.0370 | 94.8157 | 130 | 63 | 131 | 4 | 3 | 75.0000 | |
| anovak-vg | SNP | tv | map_l250_m1_e0 | homalt | 81.8115 | 69.6262 | 99.1667 | 88.3586 | 596 | 260 | 595 | 5 | 3 | 60.0000 | |
| anovak-vg | SNP | tv | tech_badpromoters | * | 89.6729 | 84.7222 | 95.2381 | 42.7273 | 61 | 11 | 60 | 3 | 3 | 100.0000 | |
| anovak-vg | SNP | tv | tech_badpromoters | het | 85.7143 | 81.8182 | 90.0000 | 48.2759 | 27 | 6 | 27 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7930 | 99.8068 | 99.7792 | 75.7754 | 3616 | 7 | 3616 | 8 | 3 | 37.5000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.2046 | 97.0093 | 99.4297 | 73.5811 | 519 | 16 | 523 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | * | map_l150_m0_e0 | homalt | 98.4894 | 99.3902 | 97.6048 | 91.2703 | 163 | 1 | 163 | 4 | 3 | 75.0000 | |
| astatham-gatk | INDEL | * | map_l150_m1_e0 | homalt | 99.0270 | 99.1342 | 98.9201 | 88.5254 | 458 | 4 | 458 | 5 | 3 | 60.0000 | |
| astatham-gatk | INDEL | * | map_l150_m2_e0 | homalt | 99.0654 | 99.1684 | 98.9627 | 89.4829 | 477 | 4 | 477 | 5 | 3 | 60.0000 | |
| astatham-gatk | INDEL | D16_PLUS | HG002complexvar | homalt | 98.9655 | 99.3080 | 98.6254 | 76.4372 | 287 | 2 | 287 | 4 | 3 | 75.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.3344 | 97.5610 | 99.1202 | 38.2246 | 320 | 8 | 338 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8372 | 98.8372 | 98.8372 | 63.4043 | 255 | 3 | 255 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5680 | 100.0000 | 99.1398 | 77.7565 | 922 | 0 | 922 | 8 | 3 | 37.5000 | |