PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26501-26550 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | tv | map_l150_m0_e0 | homalt | 98.8226 | 97.9669 | 99.6935 | 75.2231 | 1301 | 27 | 1301 | 4 | 3 | 75.0000 | |
| astatham-gatk | SNP | tv | map_l250_m0_e0 | homalt | 97.3958 | 96.8912 | 97.9058 | 92.3692 | 187 | 6 | 187 | 4 | 3 | 75.0000 | |
| astatham-gatk | SNP | tv | map_l250_m1_e0 | het | 89.4463 | 81.8131 | 98.6505 | 91.5618 | 1462 | 325 | 1462 | 20 | 3 | 15.0000 | |
| astatham-gatk | SNP | tv | map_l250_m2_e0 | het | 89.1403 | 81.2371 | 98.7469 | 92.0672 | 1576 | 364 | 1576 | 20 | 3 | 15.0000 | |
| astatham-gatk | SNP | tv | map_l250_m2_e1 | het | 89.1681 | 81.2723 | 98.7631 | 92.1160 | 1597 | 368 | 1597 | 20 | 3 | 15.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.3469 | 83.8323 | 97.9592 | 70.6587 | 140 | 27 | 144 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.0495 | 93.5622 | 98.6726 | 77.3774 | 218 | 15 | 223 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.3720 | 99.3348 | 99.4092 | 74.3463 | 1344 | 9 | 1346 | 8 | 3 | 37.5000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3035 | 98.8131 | 99.7988 | 59.4317 | 16234 | 195 | 16370 | 33 | 3 | 9.0909 | |
| asubramanian-gatk | INDEL | * | map_l100_m1_e0 | homalt | 96.2599 | 93.3170 | 99.3945 | 84.7554 | 1145 | 82 | 1149 | 7 | 3 | 42.8571 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e0 | homalt | 96.2820 | 93.4179 | 99.3272 | 85.6349 | 1178 | 83 | 1181 | 8 | 3 | 37.5000 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e1 | homalt | 96.3001 | 93.4426 | 99.3377 | 85.6787 | 1197 | 84 | 1200 | 8 | 3 | 37.5000 | |
| asubramanian-gatk | INDEL | * | map_l125_m0_e0 | * | 91.5650 | 89.1156 | 94.1527 | 97.5656 | 786 | 96 | 789 | 49 | 3 | 6.1225 | |
| asubramanian-gatk | INDEL | * | map_l150_m0_e0 | * | 90.5945 | 89.6887 | 91.5187 | 98.1956 | 461 | 53 | 464 | 43 | 3 | 6.9767 | |
| asubramanian-gatk | INDEL | * | map_l250_m1_e0 | * | 86.4236 | 84.2623 | 88.6986 | 99.0516 | 257 | 48 | 259 | 33 | 3 | 9.0909 | |
| asubramanian-gatk | INDEL | * | map_l250_m1_e0 | het | 83.2020 | 83.1579 | 83.2461 | 97.3234 | 158 | 32 | 159 | 32 | 3 | 9.3750 | |
| asubramanian-gatk | INDEL | * | map_l250_m2_e0 | * | 86.7966 | 84.2900 | 89.4569 | 99.1194 | 279 | 52 | 280 | 33 | 3 | 9.0909 | |
| asubramanian-gatk | INDEL | * | map_l250_m2_e0 | het | 83.9329 | 83.3333 | 84.5411 | 97.4454 | 175 | 35 | 175 | 32 | 3 | 9.3750 | |
| asubramanian-gatk | INDEL | * | map_l250_m2_e1 | * | 86.7031 | 84.0841 | 89.4904 | 99.1381 | 280 | 53 | 281 | 33 | 3 | 9.0909 | |
| asubramanian-gatk | INDEL | * | map_l250_m2_e1 | het | 83.7321 | 82.9384 | 84.5411 | 97.5144 | 175 | 36 | 175 | 32 | 3 | 9.3750 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.5348 | 97.9369 | 99.1400 | 71.5584 | 807 | 17 | 807 | 7 | 3 | 42.8571 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.0396 | 95.0980 | 97.0000 | 64.6643 | 97 | 5 | 97 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 70.5882 | 75.0000 | 66.6667 | 99.4646 | 9 | 3 | 6 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.0377 | 70.0000 | 62.5000 | 99.5059 | 7 | 3 | 5 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | * | tech_badpromoters | het | 55.6267 | 41.0256 | 86.3636 | 38.8889 | 16 | 23 | 19 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 14.8148 | 81.5068 | 0 | 0 | 8 | 46 | 3 | 6.5217 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 14.8148 | 80.1471 | 0 | 0 | 8 | 46 | 3 | 6.5217 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 16.0000 | 79.8387 | 0 | 0 | 8 | 42 | 3 | 7.1429 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.0000 | 78.3550 | 0 | 0 | 8 | 42 | 3 | 7.1429 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 85.4167 | 0 | 0 | 14 | 56 | 3 | 5.3571 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 16.4179 | 84.3091 | 0 | 0 | 11 | 56 | 3 | 5.3571 | |
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 11.8421 | 81.2808 | 0 | 0 | 9 | 67 | 3 | 4.4776 | |
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 88.6878 | 0 | 0 | 0 | 25 | 3 | 12.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 88.1517 | 0 | 0 | 0 | 25 | 3 | 12.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 14 | 3 | 21.4286 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 87.1560 | 0 | 0 | 0 | 14 | 3 | 21.4286 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 88.8889 | 0 | 0 | 0 | 14 | 3 | 21.4286 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 88.4298 | 0 | 0 | 0 | 14 | 3 | 21.4286 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 88.6878 | 0 | 0 | 0 | 25 | 3 | 12.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 88.1517 | 0 | 0 | 0 | 25 | 3 | 12.0000 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 79.3685 | 71.2644 | 89.5522 | 70.7424 | 62 | 25 | 60 | 7 | 3 | 42.8571 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m0_e0 | * | 52.3810 | 39.2857 | 78.5714 | 92.5532 | 11 | 17 | 11 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m0_e0 | het | 58.0645 | 47.3684 | 75.0000 | 90.6977 | 9 | 10 | 9 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m1_e0 | het | 63.2911 | 50.0000 | 86.2069 | 85.6436 | 23 | 23 | 25 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | het | 61.7131 | 47.9167 | 86.6667 | 86.2385 | 23 | 25 | 26 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e1 | het | 61.1033 | 47.0588 | 87.0968 | 85.9091 | 24 | 27 | 27 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m0_e0 | * | 50.0000 | 41.6667 | 62.5000 | 94.2857 | 5 | 7 | 5 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m0_e0 | het | 58.8235 | 55.5556 | 62.5000 | 91.8367 | 5 | 4 | 5 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m1_e0 | * | 65.2174 | 55.5556 | 78.9474 | 91.3242 | 15 | 12 | 15 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m1_e0 | het | 70.2703 | 65.0000 | 76.4706 | 88.5135 | 13 | 7 | 13 | 4 | 3 | 75.0000 | |