PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26151-26200 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D1_5 | map_l125_m2_e0 | het | 98.5651 | 98.8220 | 98.3095 | 85.7566 | 755 | 9 | 756 | 13 | 3 | 23.0769 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | het | 98.5762 | 98.8312 | 98.3226 | 85.8499 | 761 | 9 | 762 | 13 | 3 | 23.0769 | |
| jli-custom | INDEL | D1_5 | map_l150_m1_e0 | het | 98.2480 | 98.7552 | 97.7459 | 87.7633 | 476 | 6 | 477 | 11 | 3 | 27.2727 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e0 | het | 98.3564 | 98.8327 | 97.8846 | 88.2671 | 508 | 6 | 509 | 11 | 3 | 27.2727 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e1 | het | 98.2844 | 98.6590 | 97.9127 | 88.3097 | 515 | 7 | 516 | 11 | 3 | 27.2727 | |
| jli-custom | INDEL | D1_5 | map_siren | het | 99.2764 | 99.3412 | 99.2116 | 78.6894 | 2262 | 15 | 2265 | 18 | 3 | 16.6667 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 90.9027 | 83.6009 | 99.6021 | 25.4941 | 729 | 143 | 751 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2109 | 98.7915 | 99.6339 | 57.3510 | 1635 | 20 | 1633 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.7080 | 99.4792 | 97.9487 | 44.6023 | 191 | 1 | 191 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | D6_15 | segdup | * | 96.8085 | 95.2880 | 98.3784 | 93.0582 | 182 | 9 | 182 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D6_15 | segdup | homalt | 97.0874 | 100.0000 | 94.3396 | 91.8210 | 50 | 0 | 50 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.1243 | 90.5963 | 97.9381 | 81.4176 | 395 | 41 | 380 | 8 | 3 | 37.5000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.4706 | 100.0000 | 93.1818 | 85.4305 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I1_5 | HG002compoundhet | hetalt | 96.7731 | 93.7729 | 99.9716 | 58.2211 | 10481 | 696 | 10542 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.0633 | 94.3415 | 99.9468 | 62.9123 | 5602 | 336 | 5641 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 50.0000 | 100.0000 | 33.3333 | 94.8718 | 1 | 0 | 2 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | * | 98.9891 | 99.0792 | 98.8991 | 83.0903 | 538 | 5 | 539 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 79.0514 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m1_e0 | * | 99.2513 | 98.9544 | 99.5499 | 81.4397 | 1325 | 14 | 1327 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.6154 | 100.0000 | 99.2337 | 79.2939 | 518 | 0 | 518 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 99.2302 | 98.9035 | 99.5591 | 82.7700 | 1353 | 15 | 1355 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.6248 | 100.0000 | 99.2523 | 80.8106 | 531 | 0 | 531 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | * | 99.2452 | 98.9247 | 99.5677 | 82.8600 | 1380 | 15 | 1382 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.6310 | 100.0000 | 99.2647 | 80.8922 | 540 | 0 | 540 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_siren | homalt | 99.6709 | 99.8350 | 99.5074 | 76.9711 | 1210 | 2 | 1212 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I6_15 | HG002compoundhet | hetalt | 97.1767 | 94.5414 | 99.9630 | 28.7734 | 8071 | 466 | 8109 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.5816 | 87.6404 | 98.1132 | 68.5149 | 156 | 22 | 156 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 65.1786 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.3918 | 97.7459 | 97.0402 | 80.3978 | 477 | 11 | 459 | 14 | 3 | 21.4286 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 81.2500 | 0 | 0 | 0 | 3 | 3 | 100.0000 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.1944 | 96.7449 | 99.6880 | 59.3016 | 1278 | 43 | 1278 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3103 | 100.0000 | 98.6301 | 65.2381 | 216 | 0 | 216 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_siren | homalt | 96.7033 | 97.7778 | 95.6522 | 81.6367 | 88 | 2 | 88 | 4 | 3 | 75.0000 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6996 | 93.7063 | 95.7143 | 92.5013 | 134 | 9 | 134 | 6 | 3 | 50.0000 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.1456 | 96.0784 | 94.2308 | 92.3134 | 98 | 4 | 98 | 6 | 3 | 50.0000 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7622 | 99.8232 | 99.7013 | 32.7459 | 7342 | 13 | 7343 | 22 | 3 | 13.6364 | |
| jli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9406 | 99.9307 | 99.9505 | 49.4545 | 10095 | 7 | 10095 | 5 | 3 | 60.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8803 | 99.8245 | 99.9361 | 43.9129 | 6257 | 11 | 6257 | 4 | 3 | 75.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.4673 | 92.0792 | 94.8980 | 93.3106 | 93 | 8 | 93 | 5 | 3 | 60.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.0299 | 95.4545 | 92.6471 | 93.4866 | 63 | 3 | 63 | 5 | 3 | 60.0000 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7789 | 99.6438 | 99.9143 | 60.0480 | 6994 | 25 | 6992 | 6 | 3 | 50.0000 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6800 | 99.8524 | 97.5347 | 38.6336 | 7441 | 11 | 7438 | 188 | 3 | 1.5957 | |
| jli-custom | SNP | tv | map_l150_m0_e0 | homalt | 99.5851 | 99.3976 | 99.7732 | 73.0220 | 1320 | 8 | 1320 | 3 | 3 | 100.0000 | |
| jli-custom | SNP | tv | map_l250_m0_e0 | homalt | 98.4456 | 98.4456 | 98.4456 | 91.2153 | 190 | 3 | 190 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8156 | 100.0000 | 99.6318 | 74.2657 | 1353 | 0 | 1353 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.5545 | 74.9201 | 99.7073 | 29.8906 | 938 | 314 | 1022 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.7395 | 87.1028 | 99.1561 | 70.9914 | 466 | 69 | 470 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9071 | 99.9535 | 99.8607 | 47.4506 | 2151 | 1 | 2151 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 57.6271 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m0_e0 | homalt | 98.1707 | 98.1707 | 98.1707 | 91.1923 | 161 | 3 | 161 | 3 | 3 | 100.0000 | |