PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26101-26150 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 85.3367 | 78.3784 | 93.6508 | 78.1250 | 58 | 16 | 59 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 74.0741 | 83.3333 | 66.6667 | 99.0712 | 5 | 1 | 6 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 96.8750 | 0 | 26 | 0 | 3 | 3 | 100.0000 | ||
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | * | 56.0000 | 46.6667 | 70.0000 | 83.8710 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | het | 73.6842 | 77.7778 | 70.0000 | 80.3922 | 7 | 2 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | * | 56.0000 | 46.6667 | 70.0000 | 86.4865 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | het | 73.6842 | 77.7778 | 70.0000 | 83.6066 | 7 | 2 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e1 | * | 56.0000 | 46.6667 | 70.0000 | 86.6667 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e1 | het | 73.6842 | 77.7778 | 70.0000 | 83.8710 | 7 | 2 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | * | 52.6316 | 45.4545 | 62.5000 | 84.3137 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | het | 71.4286 | 83.3333 | 62.5000 | 81.3953 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e0 | * | 52.6316 | 45.4545 | 62.5000 | 86.2069 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e0 | het | 71.4286 | 83.3333 | 62.5000 | 83.3333 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | * | 52.6316 | 45.4545 | 62.5000 | 86.2069 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | het | 71.4286 | 83.3333 | 62.5000 | 83.3333 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | homalt | 97.6190 | 96.1877 | 99.0937 | 79.2996 | 328 | 13 | 328 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e1 | homalt | 97.6331 | 96.2099 | 99.0991 | 79.6206 | 330 | 13 | 330 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m0_e0 | het | 94.7368 | 93.3962 | 96.1165 | 94.1344 | 99 | 7 | 99 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m1_e0 | het | 89.0756 | 88.3333 | 89.8305 | 97.1036 | 53 | 7 | 53 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e0 | het | 89.3939 | 89.3939 | 89.3939 | 97.2454 | 59 | 7 | 59 | 7 | 3 | 42.8571 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | het | 89.3939 | 89.3939 | 89.3939 | 97.3419 | 59 | 7 | 59 | 7 | 3 | 42.8571 | |
| jpowers-varprowl | INDEL | I1_5 | tech_badpromoters | * | 83.7209 | 81.8182 | 85.7143 | 56.2500 | 18 | 4 | 18 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | tech_badpromoters | het | 84.2105 | 100.0000 | 72.7273 | 45.0000 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m0_e0 | het | 62.0690 | 52.9412 | 75.0000 | 93.5135 | 9 | 8 | 9 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | * | 56.0000 | 46.6667 | 70.0000 | 94.1176 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_siren | homalt | 81.7610 | 72.2222 | 94.2029 | 75.1799 | 65 | 25 | 65 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.9954 | 90.1961 | 76.8595 | 95.2900 | 92 | 10 | 93 | 28 | 3 | 10.7143 | |
| jpowers-varprowl | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.9859 | 98.1225 | 95.8753 | 79.7750 | 1986 | 38 | 1999 | 86 | 3 | 3.4884 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 81.5154 | 91.4474 | 73.5294 | 93.1267 | 139 | 13 | 150 | 54 | 3 | 5.5556 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.1918 | 90.9091 | 75.0000 | 96.2512 | 60 | 6 | 60 | 20 | 3 | 15.0000 | |
| jpowers-varprowl | SNP | ti | map_l250_m1_e0 | homalt | 98.1979 | 96.6397 | 99.8072 | 88.8547 | 1553 | 54 | 1553 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | SNP | ti | map_l250_m2_e0 | homalt | 98.3169 | 96.8553 | 99.8232 | 89.5678 | 1694 | 55 | 1694 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | SNP | ti | map_l250_m2_e1 | homalt | 98.2808 | 96.7833 | 99.8254 | 89.5879 | 1715 | 57 | 1715 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.4933 | 95.4980 | 99.5739 | 64.9402 | 700 | 33 | 701 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.2800 | 98.7275 | 99.8388 | 67.9580 | 1862 | 24 | 1858 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.2110 | 98.7855 | 99.6402 | 72.5769 | 3579 | 44 | 3600 | 13 | 3 | 23.0769 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.9130 | 98.1582 | 99.6795 | 48.5714 | 906 | 17 | 933 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | homalt | 99.0173 | 99.2141 | 98.8212 | 82.1404 | 505 | 4 | 503 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.8651 | 96.6463 | 99.1150 | 36.8715 | 317 | 11 | 336 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5335 | 93.9024 | 97.2222 | 86.5672 | 154 | 10 | 105 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.3908 | 98.3908 | 98.3908 | 65.9891 | 428 | 7 | 428 | 7 | 3 | 42.8571 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6106 | 99.5460 | 99.6753 | 76.5566 | 1535 | 7 | 1535 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.1908 | 91.4842 | 99.2105 | 70.2428 | 376 | 35 | 377 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.5421 | 97.3208 | 99.7944 | 32.2970 | 1453 | 40 | 1456 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m0_e0 | het | 98.1450 | 98.4772 | 97.8151 | 83.8007 | 582 | 9 | 582 | 13 | 3 | 23.0769 | |
| jli-custom | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.3232 | 99.1554 | 99.4915 | 81.9902 | 587 | 5 | 587 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3443 | 99.1817 | 99.5074 | 82.7381 | 606 | 5 | 606 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.3538 | 99.1935 | 99.5146 | 82.8286 | 615 | 5 | 615 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m0_e0 | * | 97.9839 | 97.9839 | 97.9839 | 87.4399 | 486 | 10 | 486 | 10 | 3 | 30.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 98.4902 | 98.7603 | 98.2216 | 85.1332 | 717 | 9 | 718 | 13 | 3 | 23.0769 | |